Locus 5729

Sequence ID X_DroMel_CAF1
Location 14,817,125 – 14,817,218
Length 93
Max. P 0.511665
window9297

overview

Window 7

Location 14,817,125 – 14,817,218
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.25
Mean single sequence MFE -28.52
Consensus MFE -16.04
Energy contribution -15.96
Covariance contribution -0.08
Combinations/Pair 1.28
Mean z-score -1.56
Structure conservation index 0.56
SVM decision value -0.04
SVM RNA-class probability 0.511665
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14817125 93 - 22224390
UGUCCGGCAGCGUUUGCAGUCCCUUUUAAGCCGCGGAUUGCAGUGCUGCCAUCUCGUC-------UCGGCUUCCAUAGCUUUUGGCCCA-------CCGCCCACCGC-------------
.....((((((...(((((((((.........).))))))))..)))))).....(((-------..((((.....))))...)))...-------...........------------- ( -28.70)
>DroSec_CAF1 11104 94 - 1
UGUCCGGCAGCAAUUCCAGUCGCUUUUAAGCCGCGGAUUGCAUUGCUGCCAUCUCCUC-------GCGGCUUCCAU------UGGCCCACCGACCACCGCCCACCGC-------------
.(((.((((((((((((.((.(((....))).)))))....)))))))))........-------(.((((.....------.)))))...))).............------------- ( -29.30)
>DroSim_CAF1 10322 87 - 1
UGUCCGGCAGCGAUUCCAGUCGCUUUUAAGCCGCGGAUUGCAUUGCUGCCAUCUCCUC-------GCGGCUUCCAU------UGACCCA-------CCGCCCACCGC-------------
.....(((((((((....))))))...(((((((((((.(((....))).)))....)-------)))))))....------.......-------..)))......------------- ( -28.50)
>DroEre_CAF1 16033 106 - 1
UGUCCGGCAGCGAUUCGAGUUGCUUUUAAGCCGCGCAUUGCAUUGCUGCCAUCUCGUC-------UCGGAUGUCAUUGCAUUUGGCUCA-------CCGCCCACCGCAUCAUGGCAUCAU
.....(((((((((.(((((.(((....))).))...))).)))))))))........-------...(((((((((((....(((...-------..)))....)))..)))))))).. ( -36.00)
>DroYak_CAF1 3702 102 - 1
UGUCCGGCAGCGAUUUUAGUCCCUUUUAAGCCGCGGAUUCAACUGCUGCCAUCUCCCACCAACCACCGGCUACCACC--CACCGGCU-A-------CCACCCACCGCAUCAA--------
.....(((((((.....((((((.........).)))))....)))))))...............((((........--..))))..-.-------................-------- ( -20.10)
>consensus
UGUCCGGCAGCGAUUCCAGUCGCUUUUAAGCCGCGGAUUGCAUUGCUGCCAUCUCCUC_______GCGGCUUCCAU______UGGCCCA_______CCGCCCACCGC_____________
.(((.(((((((((.....((((.........)))).....))))))))).................((...)).........))).................................. (-16.04 = -15.96 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:59 2006