Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,816,522 – 14,816,614 |
Length | 92 |
Max. P | 0.984088 |
Location | 14,816,522 – 14,816,614 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 95.87 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -22.00 |
Energy contribution | -21.80 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.62 |
Structure conservation index | 0.94 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984088 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14816522 92 + 22224390 UUGUUUGUUGAGAAACAACGAUUGGCGGUUGAUGUUGACAUUUAUAAUACAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC ((((((......))))))((((..(.((.((((((.............)))))).)))..)))).(((((........)))))......... ( -23.72) >DroSec_CAF1 10481 91 + 1 UU-UUUGUUGAGAAACAACGAUUGGCGGUUGAUGUUGACAUUUAUAAUACAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC ..-.(((((....)))))((((..(.((.((((((.............)))))).)))..)))).(((((........)))))......... ( -23.52) >DroSim_CAF1 9721 92 + 1 UUGUUUGUUGAGAAACAACGAUUGGCGGUUGAUGUUGACAUUUAUAAUACAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC ((((((......))))))((((..(.((.((((((.............)))))).)))..)))).(((((........)))))......... ( -23.72) >DroEre_CAF1 15465 92 + 1 UUGUUUGUUGUGAAACAACGAUUGGCGGUUGAUGUUGACGCUUAUAAUAUAUCAUUCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC ......(((.(((.....((((..(.(..((((((.............))))))..))..)))).(((((........)))))..))).))) ( -21.02) >DroYak_CAF1 3085 92 + 1 UUGGUUGUCGUGAAACAACGAUUGGCGGUUGAUGUUGACGUUUAUAAUAUAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC ......(((.(((.....((((..(.((.((((((.............)))))).)))..)))).(((((........)))))..))).))) ( -25.02) >consensus UUGUUUGUUGAGAAACAACGAUUGGCGGUUGAUGUUGACAUUUAUAAUACAUCAUCCUUGAUCGAGCUCAUAAAUAAUUGGGCAAUCAGGGC ....(((((....)))))((((..(.((.((((((.............)))))).)))..)))).(((((........)))))......... (-22.00 = -21.80 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:58 2006