Locus 5727

Sequence ID X_DroMel_CAF1
Location 14,815,272 – 14,815,369
Length 97
Max. P 0.915894
window9295

overview

Window 5

Location 14,815,272 – 14,815,369
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 93.81
Mean single sequence MFE -24.96
Consensus MFE -21.85
Energy contribution -22.63
Covariance contribution 0.78
Combinations/Pair 1.03
Mean z-score -2.70
Structure conservation index 0.88
SVM decision value 1.10
SVM RNA-class probability 0.915894
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14815272 97 + 22224390
CCGUAUAACGUUCAACAUUCACACUAAUGUCAUAAAAACCAACCAAACAAAUGAUUCUGUUAGUGUGAGUUUAAGUGUGAACCUAUGUGCGGGUAUG
(((((((..((((((((((((((((((((((((.................)))))...))))))))))))....)).)))))...)))))))..... ( -27.63)
>DroSim_CAF1 8461 97 + 1
CCGUAUAACGUUCAACAUUCACACUAAUGUCAUAAAAACCAACCAAACAAAUGAUUCUGUUAGUGUGAGUUUAACUGUGAAUCUAUGUGCGGGUAUG
(((((((..(((((..(((((((((((((((((.................)))))...)))))))))))).......)))))...)))))))..... ( -25.73)
>DroEre_CAF1 14357 97 + 1
CCCUAUAGCGUUCAGCAUUCACACUAAUGCCAUAAAAACCAACCAAACAAAUUAUUCUGUUAGUGUGAGUUUAAGUGUGAAUCCAUGUGUGGGUAUG
.((((((((.....))(((((((((...((((((..(((...................)))..)))).))...))))))))).....)))))).... ( -21.51)
>consensus
CCGUAUAACGUUCAACAUUCACACUAAUGUCAUAAAAACCAACCAAACAAAUGAUUCUGUUAGUGUGAGUUUAAGUGUGAAUCUAUGUGCGGGUAUG
(((((((..(((((..(((((((((((((((((.................)))))...)))))))))))).......)))))...)))))))..... (-21.85 = -22.63 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:57 2006