Locus 5723

Sequence ID X_DroMel_CAF1
Location 14,812,847 – 14,812,956
Length 109
Max. P 0.948726
window9286

overview

Window 6

Location 14,812,847 – 14,812,956
Length 109
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 88.11
Mean single sequence MFE -41.42
Consensus MFE -32.42
Energy contribution -33.92
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -2.46
Structure conservation index 0.78
SVM decision value 1.38
SVM RNA-class probability 0.948726
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14812847 109 + 22224390
GAGUUUC-----GAGGGUGUGUGAGUGCGUGGCUAAUUUGCUUGGC----ACAAAAAGUGUAGCAUGCUUUUUGGGGCCACUCGCAACACGCAACGCAGCGCAAAAGUUGCGGCCCAA
.......-----..(((((((((..((((.(((......)).((((----.((((((((((...))))))))))..))))).)))).)))))..((((((......)))))))))).. ( -44.50)
>DroSim_CAF1 6018 109 + 1
GAGUUUC-----GAGGGUGUGUGAGUGCGUGGCUAAUUUGCUUGGC----ACAAAAAGUGUAGCAUGCUUUUUGGGGCCACUCGCAACACGCAACGCAGCGCAAAAGUUGCGGCCAAA
.......-----..((((((((..(((.((((((....(((...))----)((((((((((...)))))))))).)))))).))).))))))..((((((......)))))).))... ( -42.00)
>DroEre_CAF1 12051 109 + 1
GAGUUGC-----GCGGGUGUGUGAGUGCGUGGCUAAUUUGCUUGGC----ACAAAAAGUCUAGCAUGCUUUUUGGGGCCACUCGCAACACGCAACGCAGCGCAAAAGUUGCGGCCAAA
...(((.-----((..((((((..(((.((((((....(((...))----)((((((((.......)))))))).)))))).))).))))))..((((((......))))))))))). ( -42.60)
>DroAna_CAF1 34964 118 + 1
GUUUUUCCGCCUGAGGGUGUGUGAGUGCGUGGCUAAUUUGCUGGGCGAAGAAAAAAAGAGUAGCAUGCUAUCAGGGGCCACGGGCAACACGCAACGCAGCGAAAAAGAAGCAGCCAAA
((((((.(((.((...((((((..((.(((((((..(((((...)))))........((.(((....)))))...))))))).)).))))))....)))))....))))))....... ( -36.60)
>consensus
GAGUUUC_____GAGGGUGUGUGAGUGCGUGGCUAAUUUGCUUGGC____ACAAAAAGUGUAGCAUGCUUUUUGGGGCCACUCGCAACACGCAACGCAGCGCAAAAGUUGCGGCCAAA
..............((((((((..(((.((((((.....((...((....((.....))...))..)).......)))))).))).))))))..((((((......)))))).))... (-32.42 = -33.92 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:49 2006