Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,811,269 – 14,811,367 |
Length | 98 |
Max. P | 0.862418 |
Location | 14,811,269 – 14,811,367 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 93.38 |
Mean single sequence MFE | -30.83 |
Consensus MFE | -29.27 |
Energy contribution | -29.27 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.95 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14811269 98 + 22224390 AUCAAUGGCCACCUUUGAAA--AAAGGCCACUACCUGUGCCUG------UGCCUGUGCCUUCAAUGCCAUGGCCAAAACCUGACCAUCAGGGCCAACUGGCCCACG .....((((((...(((((.--..(((((((.....)))....------.)))).....))))).....))))))..............(((((....)))))... ( -30.40) >DroSec_CAF1 5213 105 + 1 AUCAAUGGCCACCUUUGAAAA-AAAGGCCACUACUUGUGCCUGUGCCUGUGCCUGUGCCUUCAAUGCCAUGGCCAAAACCUGACCAUCAGGGCCAACUGGCCCACG .....((((((...(((((..-..((((.((.....))))))(..(........)..).))))).....))))))..............(((((....)))))... ( -31.40) >DroSim_CAF1 4447 106 + 1 AUCAAAGGCCACCUUUGAAAAAAAAGGCCACUACCUGUGCCUGUGCCCGUGCCUGUGCCUUCAAUGCCAUGGCCAAAACCUGACCAUCAGGGCCAACUGGCCCACG .(((((((...)))))))......((((.((.....)))))).....((((((((.((.......)))).)))................(((((....)))))))) ( -30.70) >consensus AUCAAUGGCCACCUUUGAAAA_AAAGGCCACUACCUGUGCCUGUGCC_GUGCCUGUGCCUUCAAUGCCAUGGCCAAAACCUGACCAUCAGGGCCAACUGGCCCACG ......(((((...(((((.....(((((((.....)))...........)))).....))))).....)))))...............(((((....)))))... (-29.27 = -29.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:44 2006