Locus 5719

Sequence ID X_DroMel_CAF1
Location 14,806,996 – 14,807,090
Length 94
Max. P 0.955877
window9278

overview

Window 8

Location 14,806,996 – 14,807,090
Length 94
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 72.29
Mean single sequence MFE -32.38
Consensus MFE -15.80
Energy contribution -16.86
Covariance contribution 1.06
Combinations/Pair 1.18
Mean z-score -2.37
Structure conservation index 0.49
SVM decision value 1.46
SVM RNA-class probability 0.955877
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14806996 94 - 22224390
--------GAGUGC---UGCCGUUUUUCCGGAU------------UUUUCCUGGCAAUGAUUAAGCAC--UGUUGCCCGGAAUACUUUUCGGCCAU-UUGCAUUGCCAGUCGAAAUGCAG
--------...(((---..(((......)))((------------(((..(((((((((.....(((.--...)))((((((....))))))....-...)))))))))..)))))))). ( -29.60)
>DroSec_CAF1 1305 96 - 1
--------CAGUGC---UGUCAUUUUUCCGGAC------------UCUCCCCGGUGAUGAUUAAGCAUCUGAAUGCCCGGAAUACUUUUCGGUCAU-UUGCAUUCCCAGUCGAAAUGCAG
--------((((((---(((((((...((((..------------.....)))).))))))..)))).)))((((.((((((....)))))).)))-)((((((.(.....).)))))). ( -31.30)
>DroSim_CAF1 449 96 - 1
--------CAGUGC---UGUCAUUUUUCCGGAC------------UCUCCCCGGCGAUGAUUAAGCAUCCGAAUGCCCGGAAUCCUUUUCGGUCAU-UUGCAUUGCCAGUCGAAAUGCAG
--------..((((---(((((((...((((..------------.....)))).))))))..)))))..(((((.((((((....)))))).)))-))(((((.........))))).. ( -29.20)
>DroAna_CAF1 27980 116 - 1
UAGAAUGGCAGUGCUUCUGGCCUUUUACAGGACAUUGCAGGACAUCCUUUCUGGCCAUGAUUAACCGC--AGUUGUCCAG-AUACUUUUCGGCCAUUUUGCAUUGCCGGAC-AAAUGCAG
..(..(((((((((...(((((.......((((((((((((....)))....((..........))))--)).))))).(-(......)))))))....)))))))))..)-........ ( -39.40)
>consensus
________CAGUGC___UGUCAUUUUUCCGGAC____________UCUCCCCGGCGAUGAUUAAGCAC__GAAUGCCCGGAAUACUUUUCGGCCAU_UUGCAUUGCCAGUCGAAAUGCAG
..........((((....((((((...((((...................)))).))))))...)))).....((.((((((....)))))).))...((((((.........)))))). (-15.80 = -16.86 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:42 2006