Locus 5718

Sequence ID X_DroMel_CAF1
Location 14,803,795 – 14,803,885
Length 90
Max. P 0.647530
window9277

overview

Window 7

Location 14,803,795 – 14,803,885
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 92.00
Mean single sequence MFE -24.41
Consensus MFE -20.00
Energy contribution -20.68
Covariance contribution 0.68
Combinations/Pair 1.09
Mean z-score -1.41
Structure conservation index 0.82
SVM decision value 0.24
SVM RNA-class probability 0.647530
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14803795 90 - 22224390
AAUGAGCAGUCAACCUGCCAUCAAUUGGCUGUCUUGUGCGUUAAUUACGCAACUCGAUUAGCCAAUUAUCAGGGCGCGGCAAAAUAAGGC
.....((.((...((((.....(((((((((((..((((((.....)))).))..)).)))))))))..))))..)).)).......... ( -26.60)
>DroSec_CAF1 39819 90 - 1
AAUGAGCAGUCAACCUGCCAUCAAUUGGCUGUCUUGUGCGUCAAUUACGCAACUCGAUUAGCCAAUUAUCAGGGCCAGGCGAAAUAAGGU
.............((((((...(((((((((((..((((((.....)))).))..)).))))))))).....)).))))........... ( -25.60)
>DroSim_CAF1 28746 90 - 1
AAUGAGCAGUCAACCUGCCAUCAAUUGGCUGUCUUGUGCGUCAAUUACGCAACUCGAUUAGCCAAUUAUCAGGGCCAGGCGAAAUAAGGU
.............((((((...(((((((((((..((((((.....)))).))..)).))))))))).....)).))))........... ( -25.60)
>DroEre_CAF1 33689 90 - 1
AAUGAGCAGCCAACCUGCCAUCAAUUGGCUGUCUUGGGCCACAAUUACGCAACUCGAUUAGCCAAUUAUCAGAGCCAGGCCAAAUAGGGC
.(((.((((.....))))))).(((((((((..(((((..............))))).)))))))))...........(((......))) ( -20.64)
>DroYak_CAF1 33192 90 - 1
AAUGAGCAGUCAACCUGCCUUCAAUUGGCUGUCUCGUGUCUCAAUUACGCAACUCGAUUAGCCAAUUAUCAGGAGCAGGCCAAAUAAGGC
..............(((((((.(((((((((..(((.((..(......)..)).))).)))))))))...))).))))(((......))) ( -23.60)
>consensus
AAUGAGCAGUCAACCUGCCAUCAAUUGGCUGUCUUGUGCGUCAAUUACGCAACUCGAUUAGCCAAUUAUCAGGGCCAGGCCAAAUAAGGC
........(((..((((.....(((((((((((...(((((.....)))))....)).)))))))))..))))....))).......... (-20.00 = -20.68 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:41 2006