Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,800,841 – 14,800,931 |
Length | 90 |
Max. P | 0.839825 |
Location | 14,800,841 – 14,800,931 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.91 |
Mean single sequence MFE | -19.18 |
Consensus MFE | -11.22 |
Energy contribution | -12.00 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.17 |
Mean z-score | -2.20 |
Structure conservation index | 0.58 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14800841 90 - 22224390 CGUUCUGUCCCAUCAUCCCAAUGCC-----CC-CAGAGCCGCCCACUCAUU--UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU .((((((...(((.......)))..-----..-)))))).((((.((((((--(((((((..((.....))..)))))))).......))))).)))) ( -22.71) >DroSec_CAF1 36905 90 - 1 CGUCCUGUCCCACCAUCCCAAUGCU-----CC-CCGAGCCACCCACUCAUU--UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGGGAGGGU ...........(((.(((((..(((-----(.-..))))..........((--(((((((..((.....))..))))))))).......))))).))) ( -22.30) >DroSim_CAF1 25819 90 - 1 CGUCCUGUCCCACCAUCCCAAUGCC-----CC-CCGAGCCACCCACUCAUU--UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU .........................-----..-.......((((.((((((--(((((((..((.....))..)))))))).......))))).)))) ( -16.81) >DroEre_CAF1 30818 91 - 1 CAUUCUGUUCCCCUAUUCCAAUUCC-----CCUCAGUGCCACCCACUCAUU--UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU ........................(-----((((((((.....))))..((--(((((((..((.....))..)))))))))..........))))). ( -18.70) >DroYak_CAF1 30222 98 - 1 CGGUCUGUCCCACUAUUCCAAUUCCUCCCUCCACAGAGCCAACCACUCAUUUUUUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU .(((((((........................))))).))..((.(((((((((((((((..((.....))..)))))))))).....))))).)).. ( -20.86) >DroPer_CAF1 43853 75 - 1 ------GUCCUCCCAUCUGGUU--U-----GG-CGGAG-------CUCUUU--UUAUGGCUCGCUUCAAGUACGUCAUAAAAAUUAACACGAACGUAU ------.(((..(((.......--)-----))-.))).-------...(((--(((((((..((.....))..))))))))))............... ( -13.70) >consensus CGUUCUGUCCCACCAUCCCAAUGCC_____CC_CAGAGCCACCCACUCAUU__UUAUGGCUCACUUCAAGUACGUCAUAAAAAUUAACAUGAGAGGGU ........................................((((.(((((...(((((((..((.....))..)))))))........))))).)))) (-11.22 = -12.00 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:40 2006