Locus 5716

Sequence ID X_DroMel_CAF1
Location 14,800,026 – 14,800,120
Length 94
Max. P 0.710589
window9275

overview

Window 5

Location 14,800,026 – 14,800,120
Length 94
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 90.53
Mean single sequence MFE -23.43
Consensus MFE -19.36
Energy contribution -19.36
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.83
SVM decision value 0.37
SVM RNA-class probability 0.710589
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14800026 94 + 22224390
AAUUCUCAAAUUCUGUUCGCC-AAAUUCAGGUGCUCAGAAAUUCUCUCUACCACU-CAUUCUCUCUGUGCGCUUUUGGCUUAGACGCCUGAGCCAA
..........(((((..((((-.......))))..)))))...........(((.-..........))).....(((((((((....))))))))) ( -22.80)
>DroSec_CAF1 36075 96 + 1
GAAUCCUGGAUUCUGUUCGCCGAAAUUCAGGUGCUCAGAAAUUCUCUCUACCACUCCAUUCACUCUGUGCGCUUUUGGCUUAGACGCCUGAGCCAA
.....(((((((.((.....)).)))))))((((.((((........................)))).))))..(((((((((....))))))))) ( -25.96)
>DroEre_CAF1 30057 94 + 1
GAUUCUCUGGUGCUGUUCGCC-AAAUUCAGGUGCUCAGAAAUUCCGUCUACCACU-CAUUCUGUCUGUGCGCUUUUGGCUUAGACGCAUGAGCCAA
......((.((((.(((.(((-(((....(((((.((((......((.....)).-.......)))).)))))))))))...))))))).)).... ( -24.14)
>DroYak_CAF1 29541 94 + 1
GAUUCUCUGAUACUGUUCGCC-AAAUUCAGGUGCUCAGAAAUUCCGUCUACCACU-CAUUCCCUCUGUGCGCUUUUGGCUUAGACGCAUGAGCCAA
......((((...((.....)-)...))))((((.((((................-.......)))).))))..((((((((......)))))))) ( -20.80)
>consensus
GAUUCUCUGAUUCUGUUCGCC_AAAUUCAGGUGCUCAGAAAUUCCCUCUACCACU_CAUUCUCUCUGUGCGCUUUUGGCUUAGACGCAUGAGCCAA
............................((((((.((((........................)))).))))))((((((((......)))))))) (-19.36 = -19.36 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:39 2006