| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,796,341 – 14,796,441 |
| Length | 100 |
| Max. P | 0.992471 |
| Location | 14,796,341 – 14,796,441 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 73.80 |
| Mean single sequence MFE | -29.08 |
| Consensus MFE | -16.15 |
| Energy contribution | -18.40 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.56 |
| SVM decision value | 2.33 |
| SVM RNA-class probability | 0.992471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14796341 100 + 22224390 UUUAUUGCA----CUGCUCGUUUCAGGCACCAAAGUCUAAUUGGAUAGGGAGACAGAGACAAAGAAAUGGCGAAAGAGAUAGUUGCAGCGUGGGGAAACGAGAU ....(..(.----(((((((((((((((......))))..(((..(..(....)..)..))).)))))))(....)........)))).)..)(....)..... ( -24.60) >DroPse_CAF1 33189 87 + 1 UUUAUUGCAUUGCCUGCCCGUUUUGGGCACCAAAGUCUAAUUGGAUAGGGAGACAGGGCCAGAGAAUGG-----------------GGCGGGCGGGUAGGAAGA ....((((.(((((((((((((((.(((.((...((((....))))..(....).)))))..))))).)-----------------)))))))))))))..... ( -34.90) >DroSec_CAF1 32577 100 + 1 UUUAUUGCA----CUGCUCGUUACAGGCACCAAAGUCUAAUUGGAUAGGGAGACAGAGACAAAGAAAUGGCGAAAGGGAUAGAUGCAGCGUGGGGAAACGAGAU ....(..(.----((((((....(...(.(((...(((..(((..(..(....)..)..))))))..))).)....)....)).)))).)..)(....)..... ( -21.90) >DroPer_CAF1 34380 87 + 1 UUUAUUGCAUUGCCUGCCCGUUUUGGGCACCAAAGUCUAAUUGGAUAGGGAGACAGGGCCAGAGAAUGG-----------------GGCGGGCGGGUAGGAUGA ....((((.(((((((((((((((.(((.((...((((....))))..(....).)))))..))))).)-----------------)))))))))))))..... ( -34.90) >consensus UUUAUUGCA____CUGCCCGUUUCAGGCACCAAAGUCUAAUUGGAUAGGGAGACAGAGACAAAGAAAGG_________________AGCGGGCGGAAACGAGAA ..........((((((((((((..((((......))))..((((....(....)....))))........................))))))))))))...... (-16.15 = -18.40 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:38 2006