| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,795,447 – 14,795,545 |
| Length | 98 |
| Max. P | 0.984243 |
| Location | 14,795,447 – 14,795,545 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 84.75 |
| Mean single sequence MFE | -33.90 |
| Consensus MFE | -26.79 |
| Energy contribution | -27.23 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.59 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.984243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14795447 98 - 22224390 CAGGCCAGGGGCUUUUGUCUGCUUUUCUUGUUGUUUUUUUUUU---UGUCCUGUUGUCCGCUUGGGAAAGUGGGCAAUGGGAAAUGGGGGACGGGUGGAGG .((((...((((....))))))))((((..(((((((((....---..(((((((((((((((....)))))))))))))))...)))))))))..)))). ( -34.00) >DroSec_CAF1 31587 93 - 1 CAGACCAGGGGCUUUUGUCUGCUUUUCUUGUU-----UUUUUU---UUUCCUGUUGUCCGCUUGGGAAAGUGGGCAAUGGGAAAUGGGGGAGGGGUGGAGG ...(((..((((....)))).(((..((..((-----......---..(((((((((((((((....)))))))))))))))))..))..))))))..... ( -35.70) >DroYak_CAF1 25169 89 - 1 CAGGCCAGGGGCUUUUGUCUGCUUUUCUUGUU-----UUUUUUUUGUUUUCUGUUGUCCGCCUGGAAAAGUGGGCAAUGGGAAAU-------GGAAGGAGG ((((..((((((........))))))))))..-----(((((((..(((((((((((((((.(....).))))))))))))))).-------.))))))). ( -32.00) >consensus CAGGCCAGGGGCUUUUGUCUGCUUUUCUUGUU_____UUUUUU___UUUCCUGUUGUCCGCUUGGGAAAGUGGGCAAUGGGAAAUGGGGGA_GGGUGGAGG ....((((((((........))))))....................(((((((((((((((((....)))))))))))))))))........))....... (-26.79 = -27.23 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:37 2006