| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,795,265 – 14,795,375 |
| Length | 110 |
| Max. P | 0.722135 |
| Location | 14,795,265 – 14,795,375 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.60 |
| Mean single sequence MFE | -20.14 |
| Consensus MFE | -14.20 |
| Energy contribution | -13.92 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14795265 110 - 22224390 GAGAUGGCAUAUUUACUUGUCAUGGCUAAAAGCAAAGCUUACGCCAAAAAAUAUUGACACAGUAAGAAAACGCUCAC--A--CACCAGCACACAGCGCUCAGAGCACACACACA (((...((...(((((((((((((((...((((...))))..))))........))))).)))))).....(((...--.--....))).....)).))).............. ( -21.70) >DroPse_CAF1 32011 83 - 1 GC-CUGGCAUAUUUACUUGUCAGGGCUAAAAGCAAAGCUUACGCCAAAAAAUAUUGACAUAGUAAGAAAGCGCUC-------CACUCGCAC----------------------- .(-((((((........)))))))((.....))....(((((..(((......))).....)))))...(((...-------....)))..----------------------- ( -17.20) >DroSec_CAF1 31410 108 - 1 GCGAUGGCAUAUUUACUUGUCAUGGCUAAAAGCAAAGCUUACGCCAAAAAAUAUUGACACAGUAAGAAAACGCUCAC--ACACACAAGCACACAGCGCUCAGAGCACACA---- ((..((((...(((((((((((((((...((((...))))..))))........))))).)))))).....(((...--.......))).......)).))..)).....---- ( -23.30) >DroYak_CAF1 24987 110 - 1 GCGAUGGCAUAUUUACUUGUCAUGGCUAAAAGCAAAGCUUACGCCAAAAAAUAUUGACACUGUAAGAAAACGCUCACGCACACACCAGCACACAGCGCUCAAAACACUCA---- (((.((((...(((((.(((((((((...((((...))))..))))........)))))..))))).....((....))........)).))...)))............---- ( -21.30) >DroPer_CAF1 33159 83 - 1 GC-CUGGCAUAUUUACUUGUCAGGGCUAAAAGCAAAGCUUACGCCAAACAAUAUUGACAUAGUAAGAAAGCGCUC-------CACUCGCAC----------------------- .(-((((((........)))))))((.....))....(((((..(((......))).....)))))...(((...-------....)))..----------------------- ( -17.20) >consensus GCGAUGGCAUAUUUACUUGUCAUGGCUAAAAGCAAAGCUUACGCCAAAAAAUAUUGACACAGUAAGAAAACGCUCAC__A__CACCAGCACACAGCGCUCA_A_CAC_CA____ ((.((((((........)))))).))....(((....(((((..(((......))).....))))).....)))........................................ (-14.20 = -13.92 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:36 2006