| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,782,156 – 14,782,272 |
| Length | 116 |
| Max. P | 0.933103 |
| Location | 14,782,156 – 14,782,272 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.72 |
| Mean single sequence MFE | -18.63 |
| Consensus MFE | -5.84 |
| Energy contribution | -6.88 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.31 |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.933103 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14782156 116 + 22224390 UAAAAAAAAAUUGAGUGAUUGCACCA-AUGAAUCAUCAUACUAUAUUGCAUUC---CUCAAACGCGUAAACAGUCAAUUUAAAAGCCAAGCAAUUCAAAGUGGCAAUCGAAACCAUUUAC .......(((((((.((.((((....-((((....))))........((....---.......)))))).)).)))))))....((((............))))................ ( -17.10) >DroSec_CAF1 17147 108 + 1 UAA-AAA----UGAGUGAUUGCACCAAAUGAAUCAUCAUACUAUAUUGCAUUC---CUCAAACGCACAAACAGUCAAUUUAAAAUCC----AAUUUAAAGUGACAAUCGAAACCAUUUAC ...-...----((((.((.((((....((((....)))).......)))).))---))))............((((.((((((....----..)))))).))))................ ( -17.00) >DroSim_CAF1 17561 109 + 1 UAAAAAA----UGAGUGAUUGCACCAAAUGAAUCAUCAUACUAUAUUGCAUUC---CUCAAACGCACAAACAGUCAAUUUAAAAUCC----AAUUUAAAGUGACAAUCGAAACCGUUUAC .......----.(((.((.((((....((((....)))).......)))).))---)))(((((........((((.((((((....----..)))))).)))).........))))).. ( -17.43) >DroEre_CAF1 11979 93 + 1 UUAAAAU----UGAGUGAUUGCACCA-GUGAAUCAUC----UGUAUUGCAAUU---CUCAAACGCACAAACAUUCCAUUUAAAAUUCGAGGAACUUAAAGUGGCA--------------- ......(----((((.(((((((.((-(........)----))...)))))))---)))))..((.((....((((.............)))).......)))).--------------- ( -17.32) >DroYak_CAF1 11819 111 + 1 UUAAAAU----UGAGUGAUUGCACCA-AUGAAUCAUC----UUGAUUGCAAACGCAAUCGAACGCACAAACAGUCCAAUUAAAAUCCAAGGAAUUUAAGGUGACAAGAAAAGCUCUUUAC .......----.((((..(((((((.-..........----((((((((....)))))))).................(((((.((....)).))))))))).))).....))))..... ( -24.30) >consensus UAAAAAA____UGAGUGAUUGCACCA_AUGAAUCAUCAUACUAUAUUGCAUUC___CUCAAACGCACAAACAGUCAAUUUAAAAUCC_AG_AAUUUAAAGUGACAAUCGAAACCAUUUAC ...........((((.((.((((.......................)))).))...))))............((((.((((((..........)))))).))))................ ( -5.84 = -6.88 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:29 2006