| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,781,843 – 14,781,934 |
| Length | 91 |
| Max. P | 0.991465 |
| Location | 14,781,843 – 14,781,934 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 75.64 |
| Mean single sequence MFE | -20.80 |
| Consensus MFE | -15.76 |
| Energy contribution | -16.83 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.76 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14781843 91 - 22224390 CGAUAUAUUUUCUCUGCGUUCCAAAUUGCCAUCAUAUGUUGGUAAUUUGGCUAUUAAAUAGUCACGCACGGGGUAUUUAUUUAU---UUAAAUC .((((.....(((((((((.(((((((((((........)))))))))))((((...))))..))))).))))....))))...---....... ( -22.70) >DroSim_CAF1 17274 84 - 1 -------UUUGCUCGGCGUUCCAAAUUGCCAUCAUAUGUUGGUAAUUCGGCUAUUAAAUAGUCACGCACGGGCUAUUUAUUUAU---UUAAAUC -------...(((((((((....((((((((........)))))))).((((((...)))))))))).)))))...........---....... ( -24.90) >DroEre_CAF1 11712 79 - 1 ----------UCUCGGCGCUCCAAAUUGCCGUCCUAUGUUGGUAAUUUGGCUAUUAAAUAGUCAUGCACGGGCUAU-AAU-UCU---ACAAAUC ----------.(((((((..(((((((((((........)))))))))))((((...))))...))).))))....-...-...---....... ( -19.00) >DroYak_CAF1 11517 92 - 1 CGACCCAUUCUCUCGGCAUUUUAAUUUGGCAUCCUAUGUUGGUAAUUUGGCUAUUUAAUAGUCACGCAUGGGGUAU-AAU-UCGAAUAUAUGUA ......((((....(.((........)).)(((((((((........(((((((...))))))).)))))))))..-...-..))))....... ( -16.60) >consensus _______UUUUCUCGGCGUUCCAAAUUGCCAUCAUAUGUUGGUAAUUUGGCUAUUAAAUAGUCACGCACGGGCUAU_AAU_UAU___AUAAAUC ..........(((((((((...(((((((((........)))))))))((((((...)))))))))).)))))..................... (-15.76 = -16.83 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:28 2006