Locus 5705

Sequence ID X_DroMel_CAF1
Location 14,769,998 – 14,770,118
Length 120
Max. P 0.603085
window9259

overview

Window 9

Location 14,769,998 – 14,770,118
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.56
Mean single sequence MFE -48.72
Consensus MFE -31.14
Energy contribution -31.67
Covariance contribution 0.53
Combinations/Pair 1.30
Mean z-score -1.55
Structure conservation index 0.64
SVM decision value 0.14
SVM RNA-class probability 0.603085
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14769998 120 + 22224390
UGAGAUCCAGUGGCAGGGAGGCCUGCACCUGCUCGCAAUUGCUAGUGAUGUUGUUGUGCGAUAGCAUCACACCCUUGGGCAGACCAGUGGUGCCGGAGGAGAAGGGCAGGAAGACCAUAU
.........((((((((....))))).(((((((((....))..(((((((((((....)))))))))))..((((.(((..(((...)))))).))))....))))))).....))).. ( -50.00)
>DroVir_CAF1 10203 120 + 1
GCGAGUCAAUGGGCAGCGCGUCCUGCACCUGCUCGCAGUUGCUGCUGAUGUUAUUGUGGGAGAGCACCACGCCCUUCGGCAGGCCGGUGGUGCCCGAGGAGAAGGGCAGAAAGACCAUGU
((((((....((((((......)))).)).)))))).....(((((((......(((((.......)))))....)))))))....(((((((((........))))......))))).. ( -44.50)
>DroPse_CAF1 14641 120 + 1
UCAGGUUUAGCGUCAGGGCGGCCUGGACCUGUUCGCAGUUGCUGGUGAUGUUGUUGUGGGACAGCAUCACGCCCUUGGGCAAGCCCGUGGUGCCCGAGGAGAAGGGCAGGAAGACCAUGU
...(((((....(((((....))))).(((((((((....))..(((((((((((....)))))))))))..((((((((..(((...)))))))))))....))))))).))))).... ( -53.40)
>DroWil_CAF1 10234 120 + 1
GCUCAUCUGCCGGCAAUGCCGUUUGCACUUGCUCACAGUUGCUGGUUAUGUUAUUGUGGGACAAGACGACACCCUUGGGCAGUCCAGUGGUGCCCGAGGAGAAUGGCAGAAACACCAUAU
.....(((((((((((......)))).((((((((((((.((.......)).)))))))).)))).......(((((((((.(.....).)))))))))....))))))).......... ( -46.30)
>DroMoj_CAF1 10097 120 + 1
GUGAGUCGAUGGGCAGCGCAUCCUCUAUCUGUUCGCAGUUGCUGCUGAUAUUGUUGUGGGACAGGACCACGCCCUUGGGCAGCCCCGUCGUGCCCGAGGAGAAGGGCAGAAAGACCAUGU
(((.((((((((((((((((........(((....))).))).)))).....(((((((.......))))(((....)))))))))))).(((((........)))))....)))))).. ( -44.90)
>DroPer_CAF1 14829 120 + 1
UCAGGUUUAGGGACAGGGCGGCCUGGACCUGUUCGCAGUUGCUGGUGAUGUUGUUGUGGGACAGCAUCACGCCCUUGGGCAAGCCCGUGGUGCCCGAGGAGAAGGGCAGGAAGACCAUGU
...(((((.....((((....))))..(((((((((....))..(((((((((((....)))))))))))..((((((((..(((...)))))))))))....))))))).))))).... ( -53.20)
>consensus
GCAGGUCUAGGGGCAGGGCGGCCUGCACCUGCUCGCAGUUGCUGGUGAUGUUGUUGUGGGACAGCACCACGCCCUUGGGCAGGCCCGUGGUGCCCGAGGAGAAGGGCAGAAAGACCAUGU
............((((......)))).(((((((..........(((.(((((((....))))))).)))..(((((((((.........)))))))))....))))))).......... (-31.14 = -31.67 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:25 2006