Locus 5704

Sequence ID X_DroMel_CAF1
Location 14,768,404 – 14,768,504
Length 100
Max. P 0.999835
window9258

overview

Window 8

Location 14,768,404 – 14,768,504
Length 100
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 79.66
Mean single sequence MFE -38.12
Consensus MFE -28.33
Energy contribution -28.57
Covariance contribution 0.25
Combinations/Pair 1.31
Mean z-score -4.39
Structure conservation index 0.74
SVM decision value 4.20
SVM RNA-class probability 0.999835
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14768404 100 - 22224390
CAAUCAGGAAUGGUACACAGACAAAUGUGGAGGUCCUAAAGCAAU--------CAACCUAUUGCCAA-AUUUAAGAGCUCUAUUUGUUUGUGGCCACA---UUCCGCGGAAC
...((.(((((((..(((((((((..((((((.((.(((((((((--------......)))))...-.)))).)).)))))))))))))))..).))---))))...)).. ( -34.70)
>DroSim_CAF1 13114 106 - 1
CAAUCAGGAAUGGUACACGGACAAAU--GGAGGUCCUAAAGCGAUAUGUGCCUCAACCUAUUGCCAA-AUUUAAGAGCUCUAUUUGUUUGUGACCACA---UUCCGCGGAAC
...((.((((((((.(((((((((((--((((.((.((((((((((.((......)).))))))...-.)))).)).)))))))))))))))))))..---))))...)).. ( -40.70)
>DroEre_CAF1 7709 106 - 1
CAAUGUGGAAUGGCACACGGGCAAAU--GGAGUUCUUGAAGCGAUGUGGUCUUCAACCUAUUGCCAA-AUUUAAGAACUCCAUUUGAUUGUGGUUGCA---UUCCGCGGAAC
...(((((((((((.(((((.(((((--((((((((((((((((((.(((.....)))))))))...-.))))))))))))))))).)))))))..))---))))))).... ( -48.60)
>DroYak_CAF1 7664 109 - 1
CAAUCAGGAAUGGUACACGGAUGAAU--GCGGGUCUUAAGGCGAUCUGAUAUUCAACCUAUUGCUAAUAUUUAAGAUCCCUUUUUGUUUGUGGA-ACAUAUUUCCGCGGAAC
...((.((((..((.((((((..((.--..(((((((((((((((.((.....))....)))))).....)))))))))...))..))))))..-))....))))...)).. ( -28.50)
>consensus
CAAUCAGGAAUGGUACACGGACAAAU__GGAGGUCCUAAAGCGAU_UG_UCUUCAACCUAUUGCCAA_AUUUAAGAGCUCUAUUUGUUUGUGGCCACA___UUCCGCGGAAC
......((((..((.(((((((((((..((((((((((((((((((.(........).)))))).....)))))))))))))))))))))))...))....))))....... (-28.33 = -28.57 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:24 2006