Locus 5703

Sequence ID X_DroMel_CAF1
Location 14,766,851 – 14,766,947
Length 96
Max. P 0.669557
window9257

overview

Window 7

Location 14,766,851 – 14,766,947
Length 96
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 87.76
Mean single sequence MFE -20.43
Consensus MFE -13.70
Energy contribution -13.38
Covariance contribution -0.32
Combinations/Pair 1.15
Mean z-score -2.28
Structure conservation index 0.67
SVM decision value 0.29
SVM RNA-class probability 0.669557
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14766851 96 + 22224390
CAGUGUUGUACA-GCAUAUAUGUA----UUAUUUUACAGUGCUGUAGAGAUCUGUAUAAGUAGUCUCUCUCCAUCUCCUUCUUAUACAAUUUCUAUCUGCA--
(((.....((((-((((...((((----......))))))))))))(((((.((((((((.((..............)).)))))))))))))...)))..-- ( -22.94)
>DroSec_CAF1 11403 88 + 1
CAG-----------CAUAUAUGUA----UCAUUUUACAGUGUUGUAGGGAUCUGUAUAAGUAGUCUCUCUCCAUCUUCUUCUUAUACAAUUUCUAUCUGCUUA
(((-----------(((...((((----......))))))))))(((..((.((((((((.((..............)).))))))))))..)))........ ( -18.44)
>DroSim_CAF1 11432 99 + 1
CAGUGUUGUACAGGCAUAUAUGUA----UCAUUUUACAGUGCUGUAGAGAUCUGUAUAAGUAGUCUCUCUCCAUCUCCUUCUUAUACAAUUUCUAUCUGCUUA
(((..(((((...(((....))).----......)))))..)))(((((((.((((((((.((..............)).)))))))))))))))........ ( -21.34)
>DroEre_CAF1 6069 99 + 1
CAGUGUUGUAUAGGCAUAUAUGUA----CCAUUUUACAGUGCUGUAGGGAUCUGUAUAAGUAGUCUCCCUCCAUCUCUUUCUAAUACAAUUUCUAUCUGCUAA
.((.(((((((.(((((...((((----......)))))))))(.(((((.(((......)))..))))).)...........)))))))..))......... ( -18.50)
>DroYak_CAF1 6035 102 + 1
CAGUGUUGUACAGGCAUAUAUGUAUGCAUCAUUUUACAGUGUUGUAGAGAUCUGUAUAAGUAGUCUCUCUCCAUCUCUUUCUUAUACA-UUUCUAUCUGCUAA
.((..(((((...(((((....))))).......)))))..))(((((((..((((((((.((.............))..))))))))-..))..)))))... ( -20.92)
>consensus
CAGUGUUGUACAGGCAUAUAUGUA____UCAUUUUACAGUGCUGUAGAGAUCUGUAUAAGUAGUCUCUCUCCAUCUCCUUCUUAUACAAUUUCUAUCUGCUAA
........................................((.((((((((.((((((((.((..............)).))))))))))))))))..))... (-13.70 = -13.38 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:23 2006