| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,755,434 – 14,755,549 |
| Length | 115 |
| Max. P | 0.520496 |
| Location | 14,755,434 – 14,755,549 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -47.97 |
| Consensus MFE | -30.24 |
| Energy contribution | -30.38 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520496 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14755434 115 - 22224390 CAGA----AAAUGAGCUCGGCGAUCGUUGGAGCCGCCUCGGCCAUUGGAGGAGCGGUAACGGCGGCCACCAGCAACAGUUGGUUCAUCCCGAUGCUGAUGGCAGCGGUGGCCUAUUUUC ..((----(((((.((((.((...(((((..(((((..(..((...)).)..)))))..)))))((((.(((((....((((......))))))))).)))).)).).))).))))))) ( -46.10) >DroVir_CAF1 2195 116 - 1 UC---CAGCGAUGAGCUCGGCUAUUGUGGGCGCUGCCUCGGCAAUCGGCGGCGCGGUGACGGCGGCAACCAGCAACAGCUGGUUCAUACCCAUGCUAAUGGCAGCGGUGGCCUAUUUCC ..---.(((.....))).((((((......(((((((..((((....((.((.((....)))).))(((((((....)))))))........))))...)))))))))))))....... ( -49.20) >DroGri_CAF1 1901 119 - 1 UACAGCAGCGAUGAGCUCAGCUAUUGUGGGUGCCGCAUCGGCGAUUGGCGGUGCGGUGACGGCGGCGACAAGCAACAGUUGGUUCAUACCAAUGCUAAUGGCAGCGGUUGCCUAUUUUC ...((((...((((((.(((((.((((..(((((((((((.(....).)))).((....))))))).))..)))).))))))))))).....))))...(((((...)))))....... ( -46.50) >DroWil_CAF1 1837 115 - 1 U----GAGACAUGAGUUCGGCAAUUGUGGGAGCUGCAUCAGCAAUUGGUGGAGCUGUAACAGCUGCCACCAGCAACAGUUGGUUCAUUCCCAUGCUAAUGGCGGCAGUGGCCUAUUUUC .----.............(((.((((((((((.((.((((((..((((((((((((...))))).))))))).....)))))).))))))).(((.....)))))))).)))....... ( -41.10) >DroMoj_CAF1 1914 116 - 1 UU---CAGCCAUGAGCUCGGCCAUUGUGGGCGCUGCCUCGGCCAUCGGGGGCGCAGUGACGGCGGCAACCAGCAACAGCUGGUUCAUACCCAUGCUGAUGGCAGCGGUUGCCUACUUCC ..---..(((........)))....(((((((((((((((((.((.((((.(((.......))).)(((((((....)))))))....)))))))))).))))))....)))))).... ( -51.50) >DroAna_CAF1 9441 115 - 1 CCCA----GAAUGAGUUCGGCGAUUGCGGGAGCCGCUUCGGCGAUCGGUGGAGCUGUCACGGCGGCCACCAGCAACAGCUGGUUCAUCCCGAUGCUGAUGGCCGCGGUGGCCUACUUCC ....----.....(((((.((((((((.((((...)))).)))))).)).)))))(((((.(((((((.(((((....(.((.....)).).))))).))))))).)))))........ ( -53.40) >consensus UA___CAGCAAUGAGCUCGGCGAUUGUGGGAGCCGCCUCGGCAAUCGGCGGAGCGGUGACGGCGGCCACCAGCAACAGCUGGUUCAUACCCAUGCUAAUGGCAGCGGUGGCCUAUUUCC ..................(((.((((((((.((((((.(.((..........)).)....)))))).((((((....)))))).....))).(((.....)))))))).)))....... (-30.24 = -30.38 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:20 2006