Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 249,879 – 249,987 |
Length | 108 |
Max. P | 0.784638 |
Location | 249,879 – 249,987 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 95.68 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -29.27 |
Energy contribution | -29.72 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.30 |
Structure conservation index | 0.87 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 249879 108 + 22224390 GGCACCGAAAAUGCCAGUCGGUGCAGAAAAAAGCAACCCCUAACAAAUGAGCGUGUGUUCAUUUUAUUUGUGCCCUGUGCUGCGCACGGUUAUUUUUCAGCUGCACCA ((((.......))))....(((((((..(((((.((((......((((((((....)))))))).....((((.(......).)))))))).)))))...))))))). ( -35.90) >DroSim_CAF1 18625 107 + 1 GGCACCGAAAAUGCAUGUCGGUGCAGAA-AAAGCAACCCCUAACAAAUGAGCGUGUGUUCAUUUUAUUUGUGCCCUGUGCCGCACACGGUUAUUUUUCAGCUGCACCA .(((.......))).....(((((((.(-((((.((((......((((((((....))))))))....(((((........))))).)))).)))))...))))))). ( -32.00) >DroYak_CAF1 19441 108 + 1 GGCACCGAAAAUUCAUGUCGGUGCAGAAAAAAGCAACCCCUAACAAAUGAGCGUGUUUUCAUUUUAUUUGUGCCCUGUGCUGCGCACGGUUAUUUUUCAGCUGCACCA ((((..((....)).))))(((((((..(((((.((((....(((((((((.(((....)))))))))))).....((((...)))))))).)))))...))))))). ( -32.60) >consensus GGCACCGAAAAUGCAUGUCGGUGCAGAAAAAAGCAACCCCUAACAAAUGAGCGUGUGUUCAUUUUAUUUGUGCCCUGUGCUGCGCACGGUUAUUUUUCAGCUGCACCA (((.............)))(((((((..(((((.((((......((((((((....))))))))....(((((........))))).)))).)))))...))))))). (-29.27 = -29.72 + 0.45)
Location | 249,879 – 249,987 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 95.68 |
Mean single sequence MFE | -33.83 |
Consensus MFE | -31.29 |
Energy contribution | -31.73 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -1.91 |
Structure conservation index | 0.92 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.747017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 249879 108 - 22224390 UGGUGCAGCUGAAAAAUAACCGUGCGCAGCACAGGGCACAAAUAAAAUGAACACACGCUCAUUUGUUAGGGGUUGCUUUUUUCUGCACCGACUGGCAUUUUCGGUGCC .(((((((..(((((.(((((((((.(......).)))).....((((((........))))))......))))).))))).)))))))....(((((.....))))) ( -37.10) >DroSim_CAF1 18625 107 - 1 UGGUGCAGCUGAAAAAUAACCGUGUGCGGCACAGGGCACAAAUAAAAUGAACACACGCUCAUUUGUUAGGGGUUGCUUU-UUCUGCACCGACAUGCAUUUUCGGUGCC .(((((((..(((((.(((((((((.(......).)))).....((((((........))))))......))))).)))-))))))))).....((((.....)))). ( -32.50) >DroYak_CAF1 19441 108 - 1 UGGUGCAGCUGAAAAAUAACCGUGCGCAGCACAGGGCACAAAUAAAAUGAAAACACGCUCAUUUGUUAGGGGUUGCUUUUUUCUGCACCGACAUGAAUUUUCGGUGCC .(((((((..(((((.(((((((((.(......).)))).....((((((........))))))......))))).))))).)))))))................... ( -31.90) >consensus UGGUGCAGCUGAAAAAUAACCGUGCGCAGCACAGGGCACAAAUAAAAUGAACACACGCUCAUUUGUUAGGGGUUGCUUUUUUCUGCACCGACAUGCAUUUUCGGUGCC .(((((((..(((((.(((((((((.(......).)))).....((((((........))))))......))))).))))).))))))).....((((.....)))). (-31.29 = -31.73 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:32 2006