| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,734,582 – 14,734,677 |
| Length | 95 |
| Max. P | 0.991602 |
| Location | 14,734,582 – 14,734,677 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 92.30 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -23.24 |
| Energy contribution | -23.20 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991602 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14734582 95 + 22224390 A-UAACCC-AUACCCAUUAUCUUGGCUUGUAUCGCGAGCGAUUUUAUCUAAUUGGUUUCCAUUUUGCGGUUUGGUCAAGUGCAUGGCAAGAAAG-AAA .-......-....((((...(((((((...((((((((.((..(((......)))..))...))))))))..)))))))...))))........-... ( -21.70) >DroSec_CAF1 27582 96 + 1 A-UAUCCC-AUACCCAUUAUCUUGGCUUGUAUCGCGAGCGAUUUCAUCUAAUUGGUUUCCAUUUUGCGGUUUGGUCAAGUGCAUGGCAAGAAAAAAAA .-......-....((((...(((((((...((((((((.((..(((......)))..))...))))))))..)))))))...))))............ ( -23.80) >DroSim_CAF1 31629 95 + 1 A-UAUCCC-AUACCCAUUAUCUUGGCUUGUAACGCGAGCGAUUUCAUCUAAUUGAUUUCCAUUUUGCGGCUUGGUCAAGUGCAUGGCAAGAAAA-AAA .-......-....((((...(((((((.....((((((.((..(((......)))..))...))))))....)))))))...))))........-... ( -22.30) >DroEre_CAF1 24399 93 + 1 A-UGUGCC-AUACCCAUUAUCUUGGCUUGUAUCGCGAACGAUUUCAUCUAAUUGGUUUCCAUUUUGCGGUUUGGUCAAGUGCAUGGCAAGAA---AAA .-..((((-((...((....(((((((...((((((((.((..(((......)))..))...))))))))..))))))))).))))))....---... ( -26.00) >DroYak_CAF1 27366 96 + 1 ACUAUCCCGCUAGCCACUAUCUUGGCUUGUAUCGCGAGCGAUUCCAUCUAAUUGGUUUCCAUUUUGCGGUUUGGUCAAGUGCAUGGCAAGAA-G-AAA ....((...((.((((....(((((((...((((((((.((..(((......)))..))...))))))))..)))))))....)))).))..-)-).. ( -30.30) >consensus A_UAUCCC_AUACCCAUUAUCUUGGCUUGUAUCGCGAGCGAUUUCAUCUAAUUGGUUUCCAUUUUGCGGUUUGGUCAAGUGCAUGGCAAGAAAA_AAA .............((((...(((((((...((((((((.((..(((......)))..))...))))))))..)))))))...))))............ (-23.24 = -23.20 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:17 2006