Locus 5697

Sequence ID X_DroMel_CAF1
Location 14,732,646 – 14,732,745
Length 99
Max. P 0.521307
window9249

overview

Window 9

Location 14,732,646 – 14,732,745
Length 99
Sequences 4
Columns 107
Reading direction forward
Mean pairwise identity 88.40
Mean single sequence MFE -18.08
Consensus MFE -14.15
Energy contribution -14.09
Covariance contribution -0.06
Combinations/Pair 1.14
Mean z-score -1.39
Structure conservation index 0.78
SVM decision value -0.02
SVM RNA-class probability 0.521307
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14732646 99 + 22224390
GUUUUAAUUUCUUUGUUU-UUGAAUAGUUUAUCUUAUA-------UUUUUAGUACUAUCUAUGGUCAGUUAUCUUGGGUUGACACUAUUUUAGUGUUUACUGGAGCA
............(((...-.((.((((((((.......-------....))).))))).))....)))....(((.(((.(((((((...))))))).))).))).. ( -13.20)
>DroSec_CAF1 25714 97 + 1
GUUUUAAUUUCUUUGUUU-UUGGAUAGUUUAUCUUAUA-------UU--UGGUACUAUCUAUGGUCAGUUAUCUUGGGUUGACACUAUUUUAGUGUUUACUGGAGCA
............(((...-.((((((((..(((.....-------..--.)))))))))))....)))....(((.(((.(((((((...))))))).))).))).. ( -21.00)
>DroSim_CAF1 29736 97 + 1
GUUUUAAUUUCUUUGUUU-UUGGAUAGUUUAUCUUAUA-------UU--UGGUACUAUCUAUGGUCAGUUAUCUUGGGUUGACACUAUUUUAGUGUUUACUGGAGCA
............(((...-.((((((((..(((.....-------..--.)))))))))))....)))....(((.(((.(((((((...))))))).))).))).. ( -21.00)
>DroEre_CAF1 22609 105 + 1
GGUAUUAUUUCUUAGCUUUUUGUGUAGUUUAUCUUAUUGGUAUCUCU--UGGUAUUAUCUAUGGUCAGUUAUCUUGGGUUGACACUCUUUUAGUGUUUACUAGAGCA
..............(((((....(((..(.(((....(((((((...--.))))))).....))).)..)))....(((.((((((.....)))))).)))))))). ( -17.10)
>consensus
GUUUUAAUUUCUUUGUUU_UUGGAUAGUUUAUCUUAUA_______UU__UGGUACUAUCUAUGGUCAGUUAUCUUGGGUUGACACUAUUUUAGUGUUUACUGGAGCA
....................((((((((....((................)).))))))))...........(((.(((.((((((.....)))))).))).))).. (-14.15 = -14.09 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:16 2006