Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,732,106 – 14,732,208 |
Length | 102 |
Max. P | 0.923783 |
Location | 14,732,106 – 14,732,208 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 93.71 |
Mean single sequence MFE | -32.18 |
Consensus MFE | -23.70 |
Energy contribution | -25.14 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.03 |
Mean z-score | -3.27 |
Structure conservation index | 0.74 |
SVM decision value | 1.16 |
SVM RNA-class probability | 0.923783 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14732106 102 - 22224390 GUUCAAUAUCCGUUCGAUAUCAGGUGUGUAAAGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACA------------CACUGAUCGA .............(((((....(((((((.(((((((((....)).))))))).((((........)))).(((((((....))))))))))------------)))).))))) ( -25.20) >DroSec_CAF1 25181 112 - 1 GUUCAAUAUCCGUUUGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACA--CACAAGCACACACUGAUCGA ..((((.......)))).(((((((((((..(((...(((((....)))))...)))......((((.(((.((((((....))))))))))--)))..)))))).)))))... ( -32.20) >DroSim_CAF1 29216 112 - 1 GUUCAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACA--CACAAGCACACACUGAUCGA .............((((..((((((((((..(((...(((((....)))))...)))......((((.(((.((((((....))))))))))--)))..)))))).)))))))) ( -33.50) >DroEre_CAF1 22049 111 - 1 GUUGAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGU-UGUCAAUUGGCAAAUACA--CACAACCACACACUGAUCGA (((((((....)))))))((((((((((...(((...(((((....)))))...)))......((((.(((.(-((((....))))).))))--)))...))))).)))))... ( -32.70) >DroYak_CAF1 24945 114 - 1 GUUGAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACACACACAAACACACACUGAUCGA (((((((....)))))))(((((((((((..(((...(((((....)))))...)))......((((.((((((((((....))))))).)))))))..)))))).)))))... ( -37.30) >consensus GUUCAAUAUCCGUUCGAUAUCAGGUGUGUAAUGUAAUGUAAUGACAAUUACUUGGCAAAAAUCGUGUUGUGGUUUGUCAAUUGGCAAAUACA__CACAAGCACACACUGAUCGA .............(((((....(((((((..(((...(((((....)))))...)))......(((.....(((((((....))))))).....)))....))))))).))))) (-23.70 = -25.14 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:15 2006