Locus 5693

Sequence ID X_DroMel_CAF1
Location 14,728,522 – 14,728,631
Length 109
Max. P 0.527365
window9244

overview

Window 4

Location 14,728,522 – 14,728,631
Length 109
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 89.59
Mean single sequence MFE -24.02
Consensus MFE -17.94
Energy contribution -18.82
Covariance contribution 0.88
Combinations/Pair 1.15
Mean z-score -1.55
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.527365
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14728522 109 + 22224390
AUUUCUGGUUAAUGGAUGCUCAAGCGGCCAUAUAAAGCCGCACUUAAUUGCUAUUUGAAAGCGAGACACAGCCAGAAAAACAAAAAAAUUGGAAGAUUAUCCAUCGAGA
.(((((((((..((....(((..(((((........)))))........(((.......)))))).)).)))))))))...........((((......))))...... ( -29.10)
>DroSec_CAF1 21684 105 + 1
AUUUCUGGUUAAUGGAUGCUCAAGCGGUCAUAUAAAGCCGCACUUAACUGCUAUAUGAAAGCGAGACUCAGCCACAAAA----AAAAGGUGGAAGAUUAUCCAUCGAGA
...(((.(...((((((((((..(((((........)))))........(((.......))))))..((..((((....----.....))))..)).)))))))).))) ( -26.00)
>DroSim_CAF1 25335 106 + 1
AUUUCUGGUUAAUGGAUGCUCAAGCGGCCAUAUAAAGCCGCACUUAAUUGCUAUAUGAAAGCGAGACACAGCCACAAAA---AAAAAGGUGGAAGAUUAUCCAUCGAGA
.(((((((((..((....(((..(((((........)))))........(((.......)))))).)).))))).....---.....((((((......)))))))))) ( -27.80)
>DroEre_CAF1 18350 102 + 1
AUUUUCGGUUAAUAGAUGCUCAAACCGCCAUAUAAAGCCGCACUUAAUUGCUAUCUGAAAGCGAGACACAAGCACAA-------AAAGCUGGAAGAUUAUCCAUCGAGA
..(((((((........(((......((........)).((......(((((.......))))).......))....-------..))).(((......)))))))))) ( -14.12)
>DroYak_CAF1 21083 102 + 1
AUUUCUGGUUAAUGGAUGCUCGAGUCGCCAUAUAAAGCCGCACUUAAUUGCUAUUUGAAAGCGAGACACAACCACAA-------AAAGGUGGAAGAUUAUCCAUCGAGA
...(((.(...(((((((.((..(((((........))(((..((((.......))))..))).)))....((((..-------....))))..)).)))))))).))) ( -23.10)
>consensus
AUUUCUGGUUAAUGGAUGCUCAAGCGGCCAUAUAAAGCCGCACUUAAUUGCUAUAUGAAAGCGAGACACAGCCACAAAA____AAAAGGUGGAAGAUUAUCCAUCGAGA
.((((.((((...(....(((..(((((........)))))........(((.......)))))).)..))))..............((((((......)))))))))) (-17.94 = -18.82 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:11 2006