| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,726,534 – 14,726,625 |
| Length | 91 |
| Max. P | 0.554582 |
| Location | 14,726,534 – 14,726,625 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 91.30 |
| Mean single sequence MFE | -24.27 |
| Consensus MFE | -16.91 |
| Energy contribution | -16.98 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554582 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14726534 91 - 22224390 UUAAAUUCCC----UCCUCGCGAUCGUUAAUGCCAGAGAUAUUUUUUGGCAUCCACAGUGGAGACACACCCCUGACGAAUUCGCAUGCAAGCUGA ..........----.....((((((((((((((((((((...)))))))))).....(((....))).....))))))..))))........... ( -27.00) >DroSec_CAF1 19737 88 - 1 UUAAAUUCCA----UCCUCGCGAUCGUUAA-GCCAGAGAUAUU--UUGGCAUCCACAGUGGAGACACACCCCUGACGAAUUCGUAUGCAAGCUGC ..........----.....((((((((((.-(((((((...))--))))).......(((....))).....))))))..))))........... ( -22.10) >DroEre_CAF1 16519 89 - 1 UUAAAUUCCC----UCCUCGGGAUCGUUAAUGCCAGAGAUAUU--UUGGCAUUCACAGUGGAGACACACCCCUGACGAAUUCGAAUGCAAACUGC ....((((..----((.(((((...((.((((((((((...))--)))))))).)).(((....)))...))))).))....))))......... ( -26.20) >DroYak_CAF1 19264 93 - 1 UUAAAUUCCCUCCCUCCUCGCAAUCGUUAAUGCCAGAGUUAUU--UUGGCAUCCACAGUGGAGACACACCCCUGACGAAUUCGAAUGCAAACUGC .................(((...(((((((((((((((...))--))))))).....(((....))).....))))))...)))........... ( -21.80) >consensus UUAAAUUCCC____UCCUCGCGAUCGUUAAUGCCAGAGAUAUU__UUGGCAUCCACAGUGGAGACACACCCCUGACGAAUUCGAAUGCAAACUGC ..................((.(.(((((((((((((.........))))))).....(((....))).....)))))).).))............ (-16.91 = -16.98 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:10 2006