Locus 5689

Sequence ID X_DroMel_CAF1
Location 14,715,400 – 14,715,490
Length 90
Max. P 0.993740
window9238

overview

Window 8

Location 14,715,400 – 14,715,490
Length 90
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 72.32
Mean single sequence MFE -19.39
Consensus MFE -3.46
Energy contribution -4.66
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -2.53
Structure conservation index 0.18
SVM decision value 2.42
SVM RNA-class probability 0.993740
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14715400 90 - 22224390
UUCACACUUUCUACCGCCGAUACGGUGGCAUUACUCCACCGAUCUGUCCGAUCCGCCGAUCCACCGAUCG-------GUAUAUCCACCU----CCUCACAC
...............((.(((.((((((.......))))))))).))..(((..(((((((....)))))-------))..))).....----........ ( -23.50)
>DroSec_CAF1 8585 82 - 1
UUCACACUUUCUACCGCCGC--------CGGUACUCCACCGAUCUGUCCGAUCCAACGAUCCGGCGAUCG-------GUAUAUCCACCU----CCUCACAC
...........(((((....--------)))))....(((((((.(((.((((....)))).))))))))-------))..........----........ ( -22.10)
>DroEre_CAF1 5783 73 - 1
UUCACACUUUCUACCGCCGAUACGGUGGCAUUACUCCAGCG-----------------AUCCGGCGAUUG-------GUAUAUCCAUCU----CCUCACAC
..............(((((((.((.(((.......))).))-----------------)).)))))..((-------(.....)))...----........ ( -16.20)
>DroYak_CAF1 8250 90 - 1
UUCACACUUUCUACCGCCGAUACGGUGGCAUUACUCCGGCGAUCUGUCCAAUCCACCGAUCCAGCGAUCG-------GUAUAUCCAUCU----CCUCACAC
.............((((((...)))))).........((.(((...........(((((((....)))))-------))......))).----))...... ( -18.53)
>DroAna_CAF1 5503 100 - 1
UUCACACUUUCUACCGACAAGCCGGUGGCAUUACUCCACCGAACCA-CCAAGCCACCGAACCACCAAGAGCCCAAAAGCCUCGCCACCUCGCACCUCGCAC
..............(((...(((((((((.................-....))))))).........((((......).)))........))...)))... ( -16.60)
>consensus
UUCACACUUUCUACCGCCGAUACGGUGGCAUUACUCCACCGAUCUGUCCAAUCCACCGAUCCAGCGAUCG_______GUAUAUCCACCU____CCUCACAC
..........((((((......))))))......................................................................... ( -3.46 =  -4.66 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:06 2006