Locus 5688

Sequence ID X_DroMel_CAF1
Location 14,709,531 – 14,709,626
Length 95
Max. P 0.651432
window9237

overview

Window 7

Location 14,709,531 – 14,709,626
Length 95
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 86.32
Mean single sequence MFE -35.82
Consensus MFE -29.95
Energy contribution -30.62
Covariance contribution 0.67
Combinations/Pair 1.18
Mean z-score -1.77
Structure conservation index 0.84
SVM decision value 0.25
SVM RNA-class probability 0.651432
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14709531 95 - 22224390
AAUGGGAAUCCCAAUGCUCCGGUCAUCGCGAUUGGCGAAAAGGCCUCCGAUUUGAUCAAAGAAGAUUGGGGCGUCAGGCGGGCGCACACUUCCGC------
..((((...)))).(((.((.(((.((((.....))))...((((((((((((.........))))))))).))).))).)).))).........------ ( -33.20)
>DroSec_CAF1 2755 101 - 1
AAUGGGAAUCCCAAUGCUCCGGUCAUCGCAAUUGGCGAAAAGGCCUCUGAUUUGAUCAAAGAAGAUUGGGGCGCCAGGCGGGCGCACACUUCCACUUAGUU
..(((((..((((((.((..(((((...((...(((......)))..))...)))))..))...))))))(((((.....)))))....)))))....... ( -33.50)
>DroSim_CAF1 2685 101 - 1
AAUGGGAAUCCAAAUGCUCCGGUCAUCGCGAUUGGCGAAAAGGCCUCCGAUUUGAUCAAAGAAGAUUGGGGCGCCAGGCGGGCGCACACUUCCACUUAGUU
....((((......(((.((.(((.((((.....))))...((((((((((((.........))))))))).))).))).)).)))...))))........ ( -35.00)
>DroEre_CAF1 4 96 - 1
AAUGGGAAUCCCAAUGCUCCGGUCAUCGCCAUUGGCGAAAAGGCCUCCGAUUUGAUCAAAGAAGAUUGGGGCGCCAGACGGGCGCAUACUUCCACU-----
..((((...))))((((.((.(((.(((((...)))))...((((((((((((.........))))))))).))).))).)).)))).........----- ( -39.40)
>DroYak_CAF1 2532 101 - 1
AAUGGGAAUCCCAAUGCACCGGUCAUCGCCAUUGGCGAAAAGGCCUCCGAUUUGAUUAAAGAAGAUUGGGGCGCCAGGCGGGCGCACACUUCCACUUAGUU
..((((...)))).(((.((.(((.(((((...)))))...((((((((((((.........))))))))).))).))).)).)))............... ( -37.90)
>DroAna_CAF1 4 93 - 1
AAUGGGAAUCCCAAUGCGCCCGUGAUCGCCAUCGGGGAGAAGGCCUCCGAUCUGAUCAAGGAGGACUGGGGCGCCCGCCGGCCAAAGCCCUCG--------
...(((..(((((.(.(..((.((((((..(((((((.......))))))).)))))).)).).).)))))..)))...(((....)))....-------- ( -35.90)
>consensus
AAUGGGAAUCCCAAUGCUCCGGUCAUCGCCAUUGGCGAAAAGGCCUCCGAUUUGAUCAAAGAAGAUUGGGGCGCCAGGCGGGCGCACACUUCCACU_____
..((((...)))).(((.((.(((.((((.....))))...((((((((((((.........))))))))).))).))).)).)))............... (-29.95 = -30.62 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:05 2006