Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,706,014 – 14,706,109 |
Length | 95 |
Max. P | 0.582426 |
Location | 14,706,014 – 14,706,109 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 89.67 |
Mean single sequence MFE | -26.75 |
Consensus MFE | -25.11 |
Energy contribution | -24.68 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.28 |
Structure conservation index | 0.94 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14706014 95 + 22224390 AGCUCGCCAUUUCUGUUGGCUG---------------UUGGGUGUUAAAGUGCAAUUAGUGCCCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG ..(((((((.......))))..---------------(((((..((((.......))))..))))).(((.((((.((((((.....)))))))))).))).....))). ( -26.80) >DroSec_CAF1 24941 102 + 1 AGCUCGCCGUUUCUGUUGGCUG--------CUGAGCGUUGGGUGUUAAAGUGCAAUUAGUGCCCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG ..(((((((.......))))..--------((...(.(((((..((((.......))))..))))).).))((((.((((((.....)))))))))).........))). ( -28.30) >DroEre_CAF1 25343 95 + 1 AGCUCGCCGUUUUUGUUGGCUG---------------UUGGGUGUUAAAGUGCAAUUAGUGCUCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG ..(((((((.......))))..---------------(((((..((((.......))))..))))).(((.((((.((((((.....)))))))))).))).....))). ( -23.10) >DroYak_CAF1 23066 110 + 1 AGCUCGCCGUUUUUGUUGGCUGUUUGGGUGCUGGGUGUUGGGUGUUAAAGUGCAAUUAGUGCUCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG ..(((((((.......))))..........(((((..((((.(((......))).))))..))))).(((.((((.((((((.....)))))))))).))).....))). ( -28.80) >consensus AGCUCGCCGUUUCUGUUGGCUG_______________UUGGGUGUUAAAGUGCAAUUAGUGCCCAGGGAAGAGGGAUAUAUGUAUGUCGUAUACCUUAUUUAUAAAGAGG ..(((((((.......)))).................(((((..((((.......))))..))))).(((.((((.((((((.....)))))))))).))).....))). (-25.11 = -24.68 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:04 2006