Locus 5685

Sequence ID X_DroMel_CAF1
Location 14,704,702 – 14,704,818
Length 116
Max. P 0.790706
window9232

overview

Window 2

Location 14,704,702 – 14,704,818
Length 116
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 88.50
Mean single sequence MFE -23.08
Consensus MFE -15.39
Energy contribution -16.14
Covariance contribution 0.75
Combinations/Pair 1.04
Mean z-score -2.72
Structure conservation index 0.67
SVM decision value 0.59
SVM RNA-class probability 0.790706
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14704702 116 - 22224390
AUUAAUGGGUGCAAAGCGCUUCGAAAUGAAAUGCACUCAAGUGCAUAGUUUUUAUUUUUGUUUGCUUUUUUUUUU-CAUUUGCACAAUCCACCCACAGAAAACCCACAUUAAACUAU
.((((((.((((((((((..(.((((((((((((((....))))))....)))))))).)..)))).........-...))))))..((........)).......))))))..... ( -22.40)
>DroSec_CAF1 23647 113 - 1
AUUAAUGGGUGCAAAGCGCUUCGAAAUGAAAAGCACUCAAGUGCAUAGUUUUGUUUUUUGUUUGCUUUU--UUUU-CAUUUGCACAAUCCACCCACA-AAAACCCACAUUAAACCAU
.....((((((....(.((...((((.((((((((..((((.(((......)))..))))..)))))))--))))-)....)).)....))))))..-................... ( -25.80)
>DroEre_CAF1 24027 109 - 1
AUCAAUGGGUGCAAAACAGCUCGAAAGGAAAUGCACUCAAGUGCAUAGUUUUU------UUUUGCUUUU--UUUUGCAUUUACACAAUCCACCCACAAAAAACCCACAUUAAACUAU
.....(((((((((((.(((..(((((((.((((((....))))))..)))))------))..)))...--)))))))))))................................... ( -23.60)
>DroYak_CAF1 21814 107 - 1
AUUAAUGGGUGCAA-ACAGUUCGAAAUGAAAUGCACUCAAGUGCAUAGUUUUU------UUUUGCUUUU--UUUU-CAUUUGCACAAUCCACCCACAAAAAACCCACAUUAAACUAU
.....((((((...-...((.(.(((((((((((((....))))))(((....------....)))...--..))-)))))).))....))))))...................... ( -20.50)
>consensus
AUUAAUGGGUGCAAAACACUUCGAAAUGAAAUGCACUCAAGUGCAUAGUUUUU______GUUUGCUUUU__UUUU_CAUUUGCACAAUCCACCCACAAAAAACCCACAUUAAACUAU
.....((((((.(((((..(((.....)))((((((....)))))).)))))..........(((................))).....))))))...................... (-15.39 = -16.14 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:54:01 2006