Locus 5681

Sequence ID X_DroMel_CAF1
Location 14,696,447 – 14,696,537
Length 90
Max. P 0.689035
window9224

overview

Window 4

Location 14,696,447 – 14,696,537
Length 90
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 75.83
Mean single sequence MFE -20.34
Consensus MFE -9.62
Energy contribution -10.30
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.47
SVM decision value 0.32
SVM RNA-class probability 0.689035
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14696447 90 - 22224390
UACCAUAGCCUAGCAUUUGGGCGCGGUAGGAAAAAACA--------CACACGCAACAUUCUUGUGUAGAAAAUGUGUAUAUUUAAUUACCACCAGACA
.......((((((...))))))..(((((..(((.(.(--------((((..(.((((....)))).)....))))).).)))..)))))........ ( -18.20)
>DroSec_CAF1 16267 98 - 1
UACCAUAGCCUAGCAUUUGGGCGCGGUAGUAAAAAAAAGACAUAACCACACGCAACAUUCUUGUGUAGAAAAUGUGUAUAUUUAACUACCACCAGACA
.......((((((...))))))..((((((.(((.....(((((.....((((((.....))))))......)))))...))).))))))........ ( -21.60)
>DroEre_CAF1 16199 96 - 1
UACCAUAGCCUAGCAUUUGGGCGCGGUAGUAAAAAAG--ACAUAGCAACACGCAACAUUCUUGUGUAGAAAAUGUGUAUAUUUAAUAACCACCGGAUA
..((...((((((...))))))..(((.((.(((...--(((((.....((((((.....))))))......)))))...))).)).)))...))... ( -20.40)
>DroYak_CAF1 13864 96 - 1
UUCCAUAGCCUAGCAUUUGGGCGCGGUAGUAAAAAAG--ACAUAACAACACGCAACAUUCUUGUGUAGAAAAUGUGUAUAUUUAAUUACCAGCAGACA
.......((((((...))))))((((((((.(((...--(((((.....((((((.....))))))......)))))...))).)))))).))..... ( -22.60)
>DroAna_CAF1 12165 68 - 1
AACUGUAGCCUAACCUCUGGGCG----------------------------GCCACAUUCUUGUGUAGAAAAAAGGU--AUUUAAUUACUGGCCAAUA
.......(((((.....)))))(----------------------------(((((((....))))........(((--(......)))))))).... ( -18.90)
>consensus
UACCAUAGCCUAGCAUUUGGGCGCGGUAGUAAAAAAG__ACAUA_CAACACGCAACAUUCUUGUGUAGAAAAUGUGUAUAUUUAAUUACCACCAGACA
((((...(((((.....)))))..)))).......................(((...((((.....))))....)))..................... ( -9.62 = -10.30 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:54 2006