Locus 5680

Sequence ID X_DroMel_CAF1
Location 14,694,100 – 14,694,203
Length 103
Max. P 0.817577
window9223

overview

Window 3

Location 14,694,100 – 14,694,203
Length 103
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 85.34
Mean single sequence MFE -23.84
Consensus MFE -16.41
Energy contribution -18.76
Covariance contribution 2.35
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.69
SVM decision value 0.67
SVM RNA-class probability 0.817577
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14694100 103 - 22224390
UUUGUCAUGUCAAUCAUCUGCAAAUGAAUCGAUUUGUUGCGGCUCCAAAAAUUCGGGGGAAGUCUCAAUAAUUGAUUCAUUUACUCAGCUUGACUUCC--UACAA----
.((((...(((((....(((.(((((((((((((.((((.((((((...........)).)))).)))))))))))))))))...))).)))))....--.))))---- ( -26.90)
>DroSec_CAF1 13909 107 - 1
UUUGUCAUGUCAAUCAUCUGCAAAUGAAUCGAUUUGUUGCGGCUACAAAAAUUCGGGGGAAGUCUCAAUAAUUGAUUCAUUUACUCAGCUUGACUUCC--UACAAUAAA
.((((...(((((....(((.(((((((((((((.((((.((((.(............).)))).)))))))))))))))))...))).)))))....--.)))).... ( -24.40)
>DroEre_CAF1 13839 107 - 1
UUUGUCAUGUCAAUCAACUGCAAAUGAAUCGAUUUGUUGCGGCUCCAAGAAUUCGGGGGAAGUCUCAAUAAUUGAUUCAUUUACUCAGCUUGACUUCC--UACAAUAAA
.((((...(((((....(((.(((((((((((((.((((.((((((..(....)...)).)))).)))))))))))))))))...))).)))))....--.)))).... ( -29.10)
>DroYak_CAF1 11448 109 - 1
UUUGUCAUGUCAAUCAUCUGCAAAUGAAUCGAUUUGUUUCGGCUCCAAAAAUUCGGGGGAAGUCUCAAUAAUUGAUUCAUUUACUCAGCUUGACUUCCUCUACAAUAAA
........(((((....(((.(((((((((((((.(((..((((((...........)).))))..))))))))))))))))...))).)))))............... ( -22.30)
>DroAna_CAF1 9582 90 - 1
UCUGUCAUGUCAAUCAUCUGCAAAUCAAUCGAUUUGUUUCGCU--------UUCGGG-------CCAAUAAUUGAUUCAUUUCAU--GCCGGACUUCC--UCCUACAAC
((((.((((..(((((...(((((((....)))))))...(((--------....))-------).......))))).....)))--).)))).....--......... ( -16.50)
>consensus
UUUGUCAUGUCAAUCAUCUGCAAAUGAAUCGAUUUGUUGCGGCUCCAAAAAUUCGGGGGAAGUCUCAAUAAUUGAUUCAUUUACUCAGCUUGACUUCC__UACAAUAAA
........(((((....(((.(((((((((((((.((((.((((((...........)).)))).)))))))))))))))))...))).)))))............... (-16.41 = -18.76 +   2.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:53 2006