Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,628,281 – 1,628,401 |
Length | 120 |
Max. P | 0.695250 |
Location | 1,628,281 – 1,628,401 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -36.36 |
Consensus MFE | -23.26 |
Energy contribution | -24.82 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.06 |
Mean z-score | -2.45 |
Structure conservation index | 0.64 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1628281 120 - 22224390 AAUGAAGAUGCAAACCGAAUCAGGGAAAUUGGCAGAGCAAAGUGUCAUCGCUUCAAAGGAAACGCCAGGCAUCGGACUCUAGCUGGAGUUGCGAUGAAGCUGGGAAGGAUUGCUUUGUUU ........(((...((......)).......)))((((((((((..(((.((((...(....).((((.(((((((((((....)))))).)))))...))))))))))))))))))))) ( -37.80) >DroSec_CAF1 23511 113 - 1 AAUCAAGAUGCAAACCGAAUCAGGGAAAUUGGCAGAGCAAAGUGUCAUCGUCUCAAAGGAAA-------CAUCGGACUCCAGAUGGAGUUGCGAUGAAGCUGGAAAGGAUUGGUUUGUUU .........(((((((.((((.((((...(((((........)))))...))))........-------(((((((((((....)))))).)))))...((....))))))))))))).. ( -35.90) >DroSim_CAF1 39946 113 - 1 AAUCAAGAUGCAAACCGAAUCAGGGAAAUUGGCAGAGCAAAGUGUCAUCGCCUCAAAGGAAA-------CAUCGGACUCCAGAUGGAGUUGCGAUGAAGCUGGAAAGGAUUGGUUUGUUU .........(((((((((.((.......(((......)))(((.(((((((......(....-------)....((((((....))))))))))))).))).....)).))))))))).. ( -34.30) >DroEre_CAF1 23591 120 - 1 AAUCAAGAUGCAAACCGUAUCGGAAAAGUUGCAAGAGCAAAGUGUCAUCGCCUCAAAGGCAACGCCAGACAUCGGACUCCAGCACGAGUUGCGAUGAAGCUGGAAAGGAUUGGUUUGUUU .........((((((((.(((.((....((((....))))....))...(((.....)))....((((.((((((((((......))))).)))))...))))....))))))))))).. ( -36.90) >DroYak_CAF1 27737 120 - 1 CAUCAAGAUGCAAACCGAAUCAGGGAAAUUGCCAGUGCAAAGUGUCAGCGCCUCAAAGGAAACGCCAGACAUUGGACUCCAGCACGAGUUGCAAUGAAGCUGGCAAGGAUUGGGUGGUCC ......(((((...((......))....((((....)))).)))))..((((.(((.(....)(((((.((((((((((......))))).)))))...))))).....))))))).... ( -36.90) >consensus AAUCAAGAUGCAAACCGAAUCAGGGAAAUUGGCAGAGCAAAGUGUCAUCGCCUCAAAGGAAACGCCAG_CAUCGGACUCCAGCUGGAGUUGCGAUGAAGCUGGAAAGGAUUGGUUUGUUU .........((((((((.(((.......(((......)))(((.(((((((......(....)...........((((((....))))))))))))).)))......))))))))))).. (-23.26 = -24.82 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:58 2006