| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,687,701 – 14,687,796 |
| Length | 95 |
| Max. P | 0.662492 |
| Location | 14,687,701 – 14,687,796 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 88.42 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -16.99 |
| Energy contribution | -16.18 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14687701 95 - 22224390 UUAUGUACAUAAUUAUAUAAGAUCUGGUUUGACAUUUAGCCAGAGACAUCGGCGACAGGUUCAUCGAAGAACCCCGCCCGAAUUCUUCUGCUAAA (((((((......)))))))..(((((((........)))))))((..((((((...(((((......))))).)).))))..)).......... ( -23.90) >DroSec_CAF1 7467 95 - 1 UUAUGUACAUAAUUAUAUACGAUCUGGUUUGACAUUUAGCCAGAGACGUCGGCGACAGGUUCUUCGAAGAACCCCGCCCGAAUUCUUCUGCCAAA .((((((......))))))((.(((((((........)))))))..))((((((...((((((....)))))).)).)))).............. ( -24.50) >DroEre_CAF1 7481 95 - 1 GUAUUUAUAUAAUUAUAUACGAUUUGGUUUGACAUUUAACCAGAGACGGUGGGUACAGGUUCUUCGAAGAACCCCGCCCGAAUUCCUCUGCUAAA ((((.((......)).)))).....((((........))))((((....(((((...((((((....))))))..))))).....))))...... ( -22.80) >DroYak_CAF1 5106 95 - 1 UUAUGCACAUUAUUAUAUACGAUCUGGUUUGACAUUUAACUAGAUACAACGGAGACAGGUUCUUCGACGAACCCCGCCCGAAUUCUUUUGCUAAA ....(((..............((((((((........))))))))....(((.(...(((((......)))))...))))........))).... ( -20.60) >consensus UUAUGUACAUAAUUAUAUACGAUCUGGUUUGACAUUUAACCAGAGACAUCGGCGACAGGUUCUUCGAAGAACCCCGCCCGAAUUCUUCUGCUAAA ......................(((((((........))))))).....(((.....(((((......)))))....)))............... (-16.99 = -16.18 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:52 2006