Locus 5678

Sequence ID X_DroMel_CAF1
Location 14,683,852 – 14,683,950
Length 98
Max. P 0.570493
window9221

overview

Window 1

Location 14,683,852 – 14,683,950
Length 98
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 80.70
Mean single sequence MFE -19.86
Consensus MFE -12.54
Energy contribution -12.47
Covariance contribution -0.06
Combinations/Pair 1.24
Mean z-score -1.73
Structure conservation index 0.63
SVM decision value 0.07
SVM RNA-class probability 0.570493
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14683852 98 - 22224390
AAAGUCACU-----------AGACUUUUCAUUAACACAAAUUGAAAUAUUCAUGAAUCGAGGGGGCGGUUUGAGCCGCUCAAAAAAAAAAAGAAAAAGGCGAACACAAU
...(((...-----------.((..(((((...........)))))...))...........(((((((....))))))).................)))......... ( -17.20)
>DroSec_CAF1 3550 106 - 1
AAAGUCACUAUGGCUACGCCAGACUUUUCAUUAACACAAAUUGAAAUAUUCAUGAAUCGAGGGGGCGGUUUGAGCCGCUCAAAAAAAAAA---AAAAGACGGACACAAU
...(((.((.((((...))))((..(((((...........)))))...))........)).(((((((....)))))))..........---....)))......... ( -21.40)
>DroEre_CAF1 3776 101 - 1
AAAGUCCCUAUGGUUACGCCUGACUUUUCAUUAACACAAAUUGAAAUAUUCAUGAAUCGAGGGGGCGUUUUGAAUCGCUUACAAA--------AAAAGGCGAACACAAA
...((((((.(((((.((..(((..(((((...........)))))...)))))))))).))))))........((((((.....--------...))))))....... ( -23.00)
>DroYak_CAF1 1384 90 - 1
AAAGUC-----------GCCAGACUUUUCAUUAACACAAAUUGAAAUAUUCAUGAAGCGAGGGGGCGAUUUGAAUCGCUAAAAAA--------AAAAUGCGAACACAAA
.(((((-----------(((...((((((((....................)))))..)))..))))))))...((((.......--------.....))))....... ( -17.85)
>consensus
AAAGUCACU________GCCAGACUUUUCAUUAACACAAAUUGAAAUAUUCAUGAAUCGAGGGGGCGGUUUGAACCGCUCAAAAA________AAAAGGCGAACACAAA
...(((...............((..(((((...........)))))...))...........(((((((....))))))).................)))......... (-12.54 = -12.47 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:51 2006