Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,683,704 – 14,683,822 |
Length | 118 |
Max. P | 0.638303 |
Location | 14,683,704 – 14,683,822 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.86 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -15.74 |
Energy contribution | -16.74 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.16 |
Mean z-score | -1.80 |
Structure conservation index | 0.63 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14683704 118 - 22224390 CCAAAACAUGGCCCUUCCUCCGAAUUUCACAUCAAUGUCCUCUGUGAAAUCCCAGUCUUGUUCACAUUUUGGUUUCAUGUUCCCCUUUCGGCUGCUUUGGUUUUGUAAGGGCAUCCAA ..........((((((.(.((((((((((((...........)))))))..((((...((....))..))))......((..((.....))..)))))))....).))))))...... ( -22.80) >DroSec_CAF1 3402 118 - 1 CCAAAACAUGGCCCUUCCUCCGAAUUUCAGAUCCAUGUCCUCUGUGAAAUCCCAGUCCUGUUUACAUUUCUGUUUCAUGUUCCCCUUUCGGAUGCUGGGAUUUUGUAAAGGCAUCCAA .....((((((..((.............))..))))))(((.((..((((((((((..((...(((....)))..))...(((......))).))))))))))..)).)))....... ( -27.82) >DroEre_CAF1 3647 99 - 1 CCAAAACAUGGCCCUUCCUCCAAAUUUCAGAUCCAUGUCCUCUGUGAAAUCCCUGUCCUGUUCA-------------------UUUUUUGGUUGCUGGGAUUUUGUAAGGGCAUCCAA ........(((........)))............(((((((.((..(((((((.((((......-------------------......))..)).)))))))..))))))))).... ( -23.30) >DroYak_CAF1 1254 100 - 1 CCAAAACAUGGCCCUUCCUCCAAAUUUCAGUUCCAUGUCCUCUGUGAAAUCCCAGUCAUGUUCC------------------CCUUUUCGGUUGCUGCGAUUUGGUUAGGGCAUCCAA ..........(((((....(((((((.((((..((((....(((.(....).))).))))....------------------((.....))..)))).)))))))..)))))...... ( -26.40) >consensus CCAAAACAUGGCCCUUCCUCCAAAUUUCAGAUCCAUGUCCUCUGUGAAAUCCCAGUCCUGUUCA__________________CCCUUUCGGUUGCUGGGAUUUUGUAAGGGCAUCCAA ........(((........)))............(((((((.((..((((((((((.(((............................)))..))))))))))..))))))))).... (-15.74 = -16.74 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:50 2006