Locus 5675

Sequence ID X_DroMel_CAF1
Location 14,680,694 – 14,680,846
Length 152
Max. P 0.870284
window9216 window9217

overview

Window 6

Location 14,680,694 – 14,680,806
Length 112
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 73.39
Mean single sequence MFE -46.47
Consensus MFE -26.01
Energy contribution -25.47
Covariance contribution -0.54
Combinations/Pair 1.27
Mean z-score -1.95
Structure conservation index 0.56
SVM decision value 0.87
SVM RNA-class probability 0.870284
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14680694 112 + 22224390
-----UUGGUGAUCUUCAUCUGGA---GUUAAUCAACUCCAUUCGGAUCGUAUCAUAUCAGCCGCCUUUUCCCCAAUCAUAAAUGCCGCUGCAUUUGUGUGAGCGGUGGGUGGAAACGGU
-----..((((((((.....((((---(((....)))))))...)))))(........).)))((((((((((((..(((((((((....))))))))).......)))).))))).))) ( -35.00)
>DroYak_CAF1 11967 117 + 1
UUCUGUUGAUGAUCGUCAUCUGCC---GUUGAUCAACUCCAUUCGGAUCGUAUCAUAUCCGCCGCCUUCUCCCCAAUCAUGAAGGCCGCUGCAUUCGUGUGGGCGGUGGGCGGGAAUGGG
....((((((.(.((.(....).)---).).)))))).((((((((((........)))).((((((.((.((((..((((((.((....)).)))))))))).)).)))))))))))). ( -46.00)
>DroAna_CAF1 16110 119 + 1
CUGUUUUGGAAACCCA-AACCGGAGCCGGCCCUCAGCUCCAGUCGGCCCGCACCAGAUCCGCCGCCUUCUCGCCGAUCAUGAAGGCCGCCGCAUUGGUGUGGGCGGUGGGCGGCACCGGG
....(((((....)))-))((((.((((.(((.(.((....))..(((((((((((..(.((.((((((...........)))))).)).)..))))))))))).).))))))).)))). ( -58.40)
>consensus
_U_U_UUGGUGAUCCUCAUCUGGA___GUUAAUCAACUCCAUUCGGAUCGUAUCAUAUCCGCCGCCUUCUCCCCAAUCAUGAAGGCCGCUGCAUUCGUGUGGGCGGUGGGCGGAAACGGG
...................(((.............(((((....)))..))......((((((((((((...........))))))((((((..........))))))))))))..))). (-26.01 = -25.47 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 14,680,726 – 14,680,846
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.17
Mean single sequence MFE -49.90
Consensus MFE -35.29
Energy contribution -35.63
Covariance contribution 0.34
Combinations/Pair 1.19
Mean z-score -2.31
Structure conservation index 0.71
SVM decision value 0.67
SVM RNA-class probability 0.817969
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14680726 120 + 22224390
AUUCGGAUCGUAUCAUAUCAGCCGCCUUUUCCCCAAUCAUAAAUGCCGCUGCAUUUGUGUGAGCGGUGGGUGGAAACGGUAUGAUACUGGUGUCCACCACCCGAAGUUUCCUCACUCCAU
.(((((...((((((((((..((((((...((.(...(((((((((....)))))))))...).)).))))))....))))))))))((((....)))).)))))............... ( -43.90)
>DroYak_CAF1 12004 120 + 1
AUUCGGAUCGUAUCAUAUCCGCCGCCUUCUCCCCAAUCAUGAAGGCCGCUGCAUUCGUGUGGGCGGUGGGCGGGAAUGGGAUGAUGCUGGUGUCCACCACCCGGAGUUUCCUCAUUCCGU
....((...(((((((.((((((((((.((.((((..((((((.((....)).)))))))))).)).))))))...)))))))))))((((....))))))((((((......)))))). ( -47.60)
>DroAna_CAF1 16149 120 + 1
AGUCGGCCCGCACCAGAUCCGCCGCCUUCUCGCCGAUCAUGAAGGCCGCCGCAUUGGUGUGGGCGGUGGGCGGCACCGGGAUGAUGCUGGUGUCCACCACCCGCAGUCGCCUCAUCCCGU
.....(((((((((((..(.((.((((((...........)))))).)).)..)))))))))))((((.....))))((((((((((.((((.....)))).)))......))))))).. ( -58.20)
>consensus
AUUCGGAUCGUAUCAUAUCCGCCGCCUUCUCCCCAAUCAUGAAGGCCGCUGCAUUCGUGUGGGCGGUGGGCGGAAACGGGAUGAUGCUGGUGUCCACCACCCGAAGUUUCCUCAUUCCGU
.................((((((((((((...........))))))((((((..........))))))))))))...(((((((.(((((((.....))))...)))....))))))).. (-35.29 = -35.63 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:47 2006