| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,669,591 – 14,669,707 |
| Length | 116 |
| Max. P | 0.646121 |
| Location | 14,669,591 – 14,669,707 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 80.00 |
| Mean single sequence MFE | -40.72 |
| Consensus MFE | -23.19 |
| Energy contribution | -24.58 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646121 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14669591 116 - 22224390 CUUGUCCAGAAAGGAUGAGGUCUCCAUCAGCAGCUCGCUGCUGCUGCUCAG---AAUGUCGUACAGCUGGAGCGGUGCAUCUCCGGCGAUGGGAUUCCCGAAGGGAAAGAACGACGACA ((..(((.....)))..))(((.....(((((((.....))))))).....---...(((((.(.(((((((........))))))).......(((((...))))).).)))))))). ( -46.20) >DroVir_CAF1 2054 116 - 1 CUUGUCCAGUAUAGACGAGGUGUCCAGUAACAGCUCGCUGCUGUUGCUCAG---AAUGUCGUAAAGCUCGUGCGGCGCAUCGCCAGCAAUGGGGUUGCCAAAUGGAAAGAAUGAGGAUA ((((((.......)))))).(((((.((((((((.....))))))))(((.---....((((...((....))((((.(((.(((....))))))))))..))))......)))))))) ( -39.80) >DroGri_CAF1 2001 119 - 1 UUUGUCCAGAAAGGAAGAGGUGUCCAGCAGCAACUCAGUGCUGCUGCUCAAUAAUAUGUCGUAGAGCUCAUGUGGCGCAUCGCCAGCAAUAGGACUGCCAAAAGGAAAGAACGAUGAUA ....(((.....)))...((((((((((((((......)))))))((((.((........)).))))...(((((((...))))).))...)))).))).................... ( -33.50) >DroWil_CAF1 2527 116 - 1 CUUGUCCAGUAUGGAAGAGGUUUCGAGUAACAGUUCAUUGCUGCUACUUAG---AAUGUCGUAAAGCUGAUGCGGCGCAUCACCAGCAAUGGGAUUGCCAAAGGGAAAGAAUGACGAGA ((((((((((......((.((((..((((.((((.....)))).))))..)---))).)).....))))....((((.(((.(((....)))))))))).............)))))). ( -38.40) >DroMoj_CAF1 2043 116 - 1 CUUGUCCAGAAUGGAGGAGGUGUCCAAUAGGAGCUCAGUGCUACCGCUGAG---AAUGUCGUACAGCUCAUGGGGCGCAUCGCCCGCAAUGGGGCUGCCGAAUGGAAAGAAUGAUGAGA (((.(((.....))).)))...((((...((..(((((((....)))))))---.........((((((.(((((((...))))).))...))))))))...))))............. ( -40.80) >DroAna_CAF1 2390 116 - 1 CUUGUCCAGAAAGGAGGAGGUGUCCAGCAGAUACUCGCUGCUGCUGCUCAG---GAUGUCGUACAGCUGGUGGGGAGCAUCACCGGCAAUGGGAUUCCCGAAGGGGAAGAACGACGAUA (((.(((.....))).)))..(((((((((...(.....)...)))))..)---)))(((((.(.((((((((......)))))))).......(((((....)))))).))))).... ( -45.60) >consensus CUUGUCCAGAAAGGAAGAGGUGUCCAGCAGCAGCUCACUGCUGCUGCUCAG___AAUGUCGUACAGCUCAUGCGGCGCAUCGCCAGCAAUGGGAUUGCCAAAGGGAAAGAACGACGAUA (((.(((.....))).)))......(((((((((.....)))))))))........((((((...((....))((((.(((.(((....))))))))))...........))))))... (-23.19 = -24.58 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:41 2006