Locus 5669

Sequence ID X_DroMel_CAF1
Location 14,666,948 – 14,667,055
Length 107
Max. P 0.500000
window9207

overview

Window 7

Location 14,666,948 – 14,667,055
Length 107
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 95.05
Mean single sequence MFE -22.30
Consensus MFE -19.61
Energy contribution -19.83
Covariance contribution 0.22
Combinations/Pair 1.03
Mean z-score -1.76
Structure conservation index 0.88
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14666948 107 + 22224390
GAAAAUAACGUGAAUGGAAAAGAUUCGAUAAUUCGAGUUUUGCUGCUCCACUUGUCACCUCAUCUGUUUCCAUUUGUCAU-AUAUUCAUUUGCUCCAAAUUCCGCUUU
(((.(((..(..((((((((((((..(((((...((((......))))...))))).....)))).))))))))..)..)-)).)))..................... ( -20.10)
>DroSec_CAF1 7098 107 + 1
GCAAAUAACGCGAAUGGAAAAGAUUCGAUAAUUCGAGUUUUGCUGCUCCACUUGUCACCUCAUCUGGUUCCAUUAUUCGUCAUAUUCAUUUGCUCCAAAUU-CGCUUU
((((((...(((((((((((((((((((....)))))))))......(((..((......))..)))))))))...)))).......))))))........-...... ( -23.40)
>DroSim_CAF1 5365 107 + 1
GCAAAUAACGCGAAUGGAAAAGAUUCGAUAAUUCGAGUUUUGCUGCUCCACUUGUCACCUCAUCUGGUUCCAUUAUUCGUCAUAUUCAUUUGCUCCAAAUU-CGCUUU
((((((...(((((((((((((((((((....)))))))))......(((..((......))..)))))))))...)))).......))))))........-...... ( -23.40)
>consensus
GCAAAUAACGCGAAUGGAAAAGAUUCGAUAAUUCGAGUUUUGCUGCUCCACUUGUCACCUCAUCUGGUUCCAUUAUUCGUCAUAUUCAUUUGCUCCAAAUU_CGCUUU
((((((...(((((((((((((((((((....)))))))))......(((..((......))..)))))))))...)))).......))))))............... (-19.61 = -19.83 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:38 2006