| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,665,014 – 14,665,133 |
| Length | 119 |
| Max. P | 0.749712 |
| Location | 14,665,014 – 14,665,133 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.17 |
| Mean single sequence MFE | -46.24 |
| Consensus MFE | -24.97 |
| Energy contribution | -24.70 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14665014 119 + 22224390 CCCAUGA-ACUUUACCUGGAUGCCCGAAGCGCUUGCUUAAGCUGACCCUGGAGCUUGCCGACCCGGUUAUUGGCCACCUCGAGCUUCAGCUGGCACAUCUUGAGGGCAUUGCGGGUGUCG .......-....(((((((((((((.(((....((((..((((((..((.(((...(((((........)))))...))).))..))))))))))...)))..))))))).))))))... ( -44.30) >DroVir_CAF1 5637 118 + 1 -CAA-GUCGAGAUACCUGGAGGCGCGCAGCGCCUGCUUGAGCUGUCCCUGGAGCUUGCCCACACGAUUGUUGGCCACCUCGAGCUUCAGCUGGCACAUCUUGAGGGUGUUGCGAGUGUCG -...-.............((.((.(((((((((..((..((.(((((((((((((((((.(((....))).)))......)))))))))..)).))).))..))))))))))).)).)). ( -47.40) >DroGri_CAF1 4952 117 + 1 -CAA-GU-GAGAUACCUGGAGGCACGCAACGCCUGCUUGAGCUGGCCCUGAAGCUUGUUGACACGAUUGUUGGCCACCUCGAGCUUCAGUUGGCACAUCUUGAGGGCGUUGCGUGUAUCG -...-..-..........((.((((((((((((..((..((.((((((((((((((((..(((....)))..))......)))))))))..))).)).))..)))))))))))))).)). ( -53.80) >DroWil_CAF1 1760 116 + 1 --UA-UU-AAGGUACCUGGAUGCCCUCAAGGCCUGCUUAAGUUGUCCUUGCAGUUUGCCCACUCGAUUGUUGGCCACCUCCAAUUUUAGUUGGCACAUUUUGAGAGCAUUCCGUGUAUCG --..-..-..(((((.(((((((.(((((((.((((.............))))..((((.(((.(((((..((...))..)))))..))).))))..))))))).))).)))).))))). ( -36.22) >DroMoj_CAF1 5365 111 + 1 ---------AGAUACCUGGAGGAGCGUAAUGCUUGCUUGAGCUGCCCUUGGAGCUUGUUUACGCGAUUGUUGGCCACCUCGAGCUUCAGUUGGCACAUCUUGAGGGCGUUGCGCGUGUCG ---------.((((((....)).((((((((((..(..((..((((.((((((((((.....((.(....).)).....))))))))))..))))..))..)..)))))))))).)))). ( -44.30) >DroAna_CAF1 4403 117 + 1 -CUAGGA-GCU-CACCUGGAGGCGCGCAGGGCCUGCUUCAGUUGGCCUUGCAGCUUGCCGACCCUGUUGUUGGCCACCUCCAGCUUCAGCUGACACAUCUUGAGGGUGUUCCGGGUGUCA -......-...-(((((((((.(((((((((((.((....)).)))))))).....((((((......))))))..((((((((....)))).........))))))))))))))))... ( -51.40) >consensus _CAA_GU_GAGAUACCUGGAGGCGCGCAACGCCUGCUUGAGCUGGCCCUGGAGCUUGCCGACACGAUUGUUGGCCACCUCGAGCUUCAGCUGGCACAUCUUGAGGGCGUUGCGGGUGUCG ..................((.(((((.((.(((..((((((.((.((((((((((((((.((......)).)))......)))))))))..))))...))))))))).)).))))).)). (-24.97 = -24.70 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:37 2006