Locus 5665

Sequence ID X_DroMel_CAF1
Location 14,650,843 – 14,650,933
Length 90
Max. P 0.669111
window9201

overview

Window 1

Location 14,650,843 – 14,650,933
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 89.94
Mean single sequence MFE -16.70
Consensus MFE -12.21
Energy contribution -11.53
Covariance contribution -0.69
Combinations/Pair 1.23
Mean z-score -1.87
Structure conservation index 0.73
SVM decision value 0.29
SVM RNA-class probability 0.669111
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14650843 90 - 22224390
AUUGAAAAGCACAAAUCAAAGUGCUUCAAAAAUGUUGUAGGAAAAUUUUCCAAUUCGAUUUUCCAUUAUGGCAUUCCUCAUACAAAUCGU
.((((..(((((........))))))))).(((((..((((((((((.........))))))))..))..)))))............... ( -19.40)
>DroSec_CAF1 120170 90 - 1
AUUGGAAAACACAAAUCAAAGUGCUUCGAAAGUGUUGUUGGAAAAUUUUCCAAUUCGAUUUUCCAUUAUGGCAUUCCUCAUACAAAUCGU
..((((((((((........)))..((((.......(((((((....)))))))))))))))))).(((((......)))))........ ( -16.21)
>DroEre_CAF1 113530 87 - 1
AUCGCAAAGCACCAAUCAAAGUGCUUCGAAAAUG---UAGGAAAAUUUUCCAAUUCGAUUUUCCAUUAUGGCAUUCCUCAUACAAAUCGU
.(((..((((((........)))))))))...((---((((((((((.........)))))))).....((....))...))))...... ( -16.20)
>DroYak_CAF1 116294 87 - 1
AUCGAAGACCACCAAUAAAAGUGCUUCGAAAAUG---UAGGAAAUUUUUCCAAUUCGAAUUUCUAUUAUGGCAUUCCUCAUACAAAUCGU
.((((((..(((........)))))))))...((---((((((....)))).....((((.((......)).))))....))))...... ( -15.00)
>consensus
AUCGAAAAGCACAAAUCAAAGUGCUUCGAAAAUG___UAGGAAAAUUUUCCAAUUCGAUUUUCCAUUAUGGCAUUCCUCAUACAAAUCGU
.(((..((((((........)))))))))..........((((((((.........))))))))..(((((......)))))........ (-12.21 = -11.53 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:32 2006