Locus 5664

Sequence ID X_DroMel_CAF1
Location 14,650,068 – 14,650,168
Length 100
Max. P 0.969872
window9200

overview

Window 0

Location 14,650,068 – 14,650,168
Length 100
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 91.21
Mean single sequence MFE -33.60
Consensus MFE -29.92
Energy contribution -29.18
Covariance contribution -0.75
Combinations/Pair 1.20
Mean z-score -2.21
Structure conservation index 0.89
SVM decision value 1.65
SVM RNA-class probability 0.969872
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14650068 100 + 22224390
GUGGCGAUUUCCAAAGGCGA----CGGUUUGUUGUCAAGCAAUUUAGCUCACUUCGCCGAAGGUUAGAGGCAACUGACUCUUUCGGCACCUAUUCGCCUUAUCG
..(((((........(((((----(.....)))))).(((......)))......((((((((....((....))....))))))))......)))))...... ( -32.00)
>DroSec_CAF1 119509 100 + 1
GAGGCGAUUUCCAAAGACGA----CGGCUGGUUGUCAAGCAAUUUAGCUCACUUCGCCGAAGGUUAGAGGCAACUGACUCUUUCGGCACCUCUUCGCCUUAUCG
(((((((........(((((----(.....)))))).(((......)))......((((((((....((....))....))))))))......))))))).... ( -35.50)
>DroEre_CAF1 112818 97 + 1
GAGGCGAUUUCCAAAGACAGU-------UUGUUGUCAGGCAAUUUAGCUCACUUCGCCGAAGGUUAGAGGCAACUGACUCUUUCGGCACCUCUUCGCCUUAUCG
(((((((........(((((.-------...))))).(((......)))......((((((((....((....))....))))))))......))))))).... ( -32.10)
>DroYak_CAF1 115592 104 + 1
GAGGCGAUUUCCAAAGACGGUUUGCUGUUUGUUGUCAAGCAAUUUAGCUCACUUCGCCGAAGGUUAGAGGCAACUGACUCUUUUGGCACCUCUUCGCCUUAUCG
(((((((........((.(((..((((.(((((....)))))..))))..)))))((((((((....((....))....))))))))......))))))).... ( -34.80)
>consensus
GAGGCGAUUUCCAAAGACGA____CGGUUUGUUGUCAAGCAAUUUAGCUCACUUCGCCGAAGGUUAGAGGCAACUGACUCUUUCGGCACCUCUUCGCCUUAUCG
(((((((........(((((...........))))).(((......)))......((((((((....((....))....))))))))......))))))).... (-29.92 = -29.18 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:31 2006