Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,645,895 – 14,646,000 |
Length | 105 |
Max. P | 0.580467 |
Location | 14,645,895 – 14,646,000 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 92.09 |
Mean single sequence MFE | -25.53 |
Consensus MFE | -21.92 |
Energy contribution | -22.80 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.45 |
Structure conservation index | 0.86 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14645895 105 - 22224390 UGGAUUGCCUUAAAUUUGUUCAGCGAAAUUAAUUAACAUAACAUUGGCAGCUAGUUGAGCCAAGAGGUUUGGCUAUCGGCCAAGCGAUUAGAACACACA-AAUACC ..((((((.((((.((((.....)))).))))...........(((((.(.((((..((((....))))..)))).).)))))))))))..........-...... ( -27.20) >DroSec_CAF1 115402 105 - 1 UGGAUUGCCUUA-AUUUGCUCAGCGAAAUUAAUUAACAUAACAUUGGCAGCUAGUUGAGCCAAGAGGUUUGGCUAUCGUCCAAGCGAUUAGAACUCGCAAAAUACC ((((((((((((-((((((...)).))))))).............))))(.((((..((((....))))..)))).)))))).((((.......))))........ ( -26.81) >DroSim_CAF1 113424 105 - 1 UGGAUUGCCUUA-AUUUGCUCAGCGAAAUUAAUUAACAUAACAUUGGCAGCUAGUGGAGCCAAGAGGUUUGGCUAUCGUCCAAGCGAUUAGAACUCGCAAAAUACC ((((((((((((-((((((...)).))))))).............))))(.((((.(((((....))))).)))).)))))).((((.......))))........ ( -25.61) >DroYak_CAF1 111750 104 - 1 UGGAUUGCCUUA-AUUUGCACAGCGAAAUUAAUUAACACUACAUUGGCAGCCAGUAAAGCCAAAAGGUUUGGCUAUCAGCCAAGCGAUUAGAACUCACA-AGUACC ..((((((.(((-((((((...)).)))))))...........(((((((((((....(((....)))))))))....)))))))))))..........-...... ( -22.50) >consensus UGGAUUGCCUUA_AUUUGCUCAGCGAAAUUAAUUAACAUAACAUUGGCAGCUAGUUGAGCCAAGAGGUUUGGCUAUCGGCCAAGCGAUUAGAACUCACA_AAUACC ..((((((......(((((...)))))................(((((.(.((((((((((....)))))))))).).)))))))))))................. (-21.92 = -22.80 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:30 2006