Locus 5661

Sequence ID X_DroMel_CAF1
Location 14,639,513 – 14,639,618
Length 105
Max. P 0.597202
window9196

overview

Window 6

Location 14,639,513 – 14,639,618
Length 105
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 81.59
Mean single sequence MFE -27.20
Consensus MFE -17.30
Energy contribution -17.53
Covariance contribution 0.23
Combinations/Pair 1.12
Mean z-score -1.89
Structure conservation index 0.64
SVM decision value 0.13
SVM RNA-class probability 0.597202
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14639513 105 - 22224390
GUUAAAUCAAAAUCAAGAUGGUAUUUCGGAUGCAGCAAUAAAGACCGUACU----CGUACAAUAAUAUCAUUCACAUAAAUACCAGGUUGCUUUGCUGAACUCCUCGGU
...........................(((..((((((....(((((((..----..))).........(((......)))....))))...))))))...)))..... ( -16.40)
>DroSec_CAF1 109328 97 - 1
GUUGAAUCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUGCACAGUACU------------CAUACCAGGUUGUUUUGCCGAACUCCUCGGU
.((((.......))))((.((.((((((((...((((......(((....((((((((...)))))------------)))....)))))))..))))))))))))... ( -31.40)
>DroSim_CAF1 107088 97 - 1
GUUGAAUCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUGCACAGUACU------------CAUACCAGGUUGCUUUGCCGAACUCCUCGGU
.((((.......))))((.((.((((((((...((((......(((....((((((((...)))))------------)))....)))))))..))))))))))))... ( -33.80)
>consensus
GUUGAAUCAAAAUCAAGAUGGUAGUUCGGCUGCAGCAAUAAAGACCGAAGAUGAGUGCACAGUACU____________CAUACCAGGUUGCUUUGCCGAACUCCUCGGU
................((.((.((((((((.(((((..................................................)))))...))))))))))))... (-17.30 = -17.53 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:28 2006