| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 1,619,014 – 1,619,109 |
| Length | 95 |
| Max. P | 0.604488 |
| Location | 1,619,014 – 1,619,109 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 83.14 |
| Mean single sequence MFE | -29.24 |
| Consensus MFE | -15.84 |
| Energy contribution | -16.76 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1619014 95 + 22224390 ----GAAGUUGCCACAGUCAAAAGCGAAAGAAAGUGGUGGCUUUCUUCAUAUUUUUG----------UGGGACAAAUCAACAGAACUACCAGCUGCAGC--UGGUGGAGUC ----((((..(((((...((....(....)....)))))))...))))....(((((----------(..((....)).))))))((((((((....))--)))))).... ( -31.80) >DroSec_CAF1 14679 95 + 1 ----GAAGUUGCCACAGUCAAAAGCGAAAGAAAGUGGCGGCUUUCUUCAUAUUUUUG----------UGGGACAAAUCAACAGAAAUAGCAGCUGCAGC--UGGUGGAGUC ----(((((((((((..((..........))..)))))))))))(((((((((((((----------(..((....)).))))))))..((((....))--)))))))).. ( -31.40) >DroSim_CAF1 30608 95 + 1 ----GAAGUUGCCACAGUCAAAAGCGAAAGAAAGUGGCGGCUUUCUUCAUAUUUUUG----------UGGGACAAAUCAACAGAACUAGCAGCUGCAGC--UGGUGGAGUC ----(((((((((((..((..........))..)))))))))))((((((..(((((----------(..((....)).))))))....((((....))--)))))))).. ( -29.20) >DroEre_CAF1 15146 84 + 1 ----CAAGUUGCCACAGUCA-------------GUGGCGGCUUUCUUCAUAUUUUUG----------UGGGACAAAUCAACAGAACCACCAGCUGCAAUUUUGCCGGAGUC ----.((((((((((.....-------------)))))))))).((((........(----------(((..(.........)..)))).....(((....))).)))).. ( -22.20) >DroYak_CAF1 16525 109 + 1 GAACGAGGCUGCCACAGUCAAACGCGAAAGAAAGUGGCGGCUUUCCUCAUAUUUUUGUAUAUUUCUAUGGGACAAAUCAACAGAACUACCAGCUGCAGC--UGCUGGAGUC ((..(((((((((((..((..........))..)))))))))))..)).....(((((.(((....)))..)))))........(((.(((((......--.)))))))). ( -31.60) >consensus ____GAAGUUGCCACAGUCAAAAGCGAAAGAAAGUGGCGGCUUUCUUCAUAUUUUUG__________UGGGACAAAUCAACAGAACUACCAGCUGCAGC__UGGUGGAGUC ....(((((((((((..((..........))..)))))))))))((((((.................(((......))).(((.........)))........)))))).. (-15.84 = -16.76 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:56 2006