| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,639,104 – 14,639,195 |
| Length | 91 |
| Max. P | 0.998030 |
| Location | 14,639,104 – 14,639,195 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Mean single sequence MFE | -20.83 |
| Consensus MFE | -16.43 |
| Energy contribution | -16.43 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.79 |
| SVM decision value | 2.99 |
| SVM RNA-class probability | 0.998030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14639104 91 - 22224390 ------AGCCUCACAUAUACGAGUUCCUUGGCGAGACAUCAAAUUUCGUGUGGCGCCAAGUUCUCCUCCCGCCCCAAAAGCAAAAAAAAAAAAAGCA ------.((...........(((...(((((((..((((........))))..)))))))..))).....((.......)).............)). ( -20.50) >DroSim_CAF1 106664 90 - 1 ------AGCCUCACAUAUACGAGUUCCUUGGCGAGACAUCAAAUUUCGUGUGGCGCCAAGCUCUCCUCCCACC-CAAAAACAAAAAAAAAAAAAACA ------..............(((...(((((((..((((........))))..)))))))..)))........-....................... ( -18.30) >DroYak_CAF1 105214 80 - 1 GGUAGGAGCCUCACAUAUACGAGUUCCUUGGCGAGACAUCAAAUUUCGUGUGGCGCCAAGUUCCACCCUC----CAAAAACA-------------AA (((.((((((((........)))....((((((..((((........))))..))))))))))))))...----........-------------.. ( -23.70) >consensus ______AGCCUCACAUAUACGAGUUCCUUGGCGAGACAUCAAAUUUCGUGUGGCGCCAAGUUCUCCUCCC_CC_CAAAAACAAAAAAAAAAAAA_CA .........(((........)))...(((((((..((((........))))..)))))))..................................... (-16.43 = -16.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:25 2006