Locus 5658

Sequence ID X_DroMel_CAF1
Location 14,633,616 – 14,633,731
Length 115
Max. P 0.885016
window9192

overview

Window 2

Location 14,633,616 – 14,633,731
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.99
Mean single sequence MFE -29.55
Consensus MFE -15.61
Energy contribution -18.30
Covariance contribution 2.69
Combinations/Pair 1.10
Mean z-score -2.78
Structure conservation index 0.53
SVM decision value 0.93
SVM RNA-class probability 0.885016
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14633616 115 - 22224390
ACACGCUUUAUUCAUGACAAAAACAAUUUUUGCACCAUUUGAUAAUCAAGUUGAUUGGAUUGCAAGA----AUUGUGUAUUCCAAGCCUAAUGGUUUGUUAUGUCAUUUGUUUUAAGCC-
....((((.((..((((((...(((((((((((((((.(..((......))..).)))..)))))))----)))))......((((((....))))))...))))))..))...)))).- ( -35.30)
>DroSec_CAF1 103500 118 - 1
ACACGCUUAAUUCAUGACAA-AACAAAGUCUGCUCAAUUUGAUAAUCAAGUUGAUUGGAUUGCAAGAUUGGAUUGUAUUUUCCAAGCCUAAUAGUGCGUUAUGUCAUUUGCUUUAAGCC-
....((((((..(((((((.-(((..(((((..((((((((.....))))))))..)))))(((..(((((.(((.......)))..)))))..)))))).)))))..))..)))))).- ( -35.30)
>DroSim_CAF1 101314 118 - 1
ACACGCUUAAUUCACGACAA-AACAAAGUCUGCUCAAUUUGAUAAUCAAGUUGAUUGGAUUGCGAGAUUGGAUUGUAUUUUCCAAGCCUAAUAGUGCGUUAUGUCAUUUGUUUUAAGCC-
....((((((..((.((((.-(((..(((((..((((((((.....))))))))..)))))(((..(((((.(((.......)))..)))))..)))))).))))...))..)))))).- ( -33.70)
>DroYak_CAF1 98461 100 - 1
ACACG-UUAAUUCAUGACGA-AACAGAGU--------------ACAAAAGUUGAUUGGAUUGAAAGA----AUUGUAUUUUCCAAGCCUAAUGGUUCGCAAUGUCAUUGGUUUUAAGCCC
.....-.......((((((.-...(((((--------------((((...(..((...))..)....----.)))))))))...((((....)))).....)))))).(((.....))). ( -13.90)
>consensus
ACACGCUUAAUUCAUGACAA_AACAAAGUCUGCUCAAUUUGAUAAUCAAGUUGAUUGGAUUGCAAGA____AUUGUAUUUUCCAAGCCUAAUAGUGCGUUAUGUCAUUUGUUUUAAGCC_
....((((((..(((((((...............(((((((.....))))))).(((((.(((((.......)))))...)))))................)))))..))..)))))).. (-15.61 = -18.30 +   2.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:24 2006