Locus 5656

Sequence ID X_DroMel_CAF1
Location 14,619,378 – 14,619,498
Length 120
Max. P 0.865085
window9190

overview

Window 0

Location 14,619,378 – 14,619,498
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.89
Mean single sequence MFE -41.57
Consensus MFE -26.18
Energy contribution -27.60
Covariance contribution 1.42
Combinations/Pair 1.34
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value 0.84
SVM RNA-class probability 0.865085
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14619378 120 - 22224390
ACAUUUCACGGUGCUCGUUGCCGAUCGGAAUACGGAAGUGGGUUGUGCCGCGGCCACGUACUCCGUGUCCGGCCAAUCGUACAAGGCCUUCCUGCUGGCCUGUAACUAUGCGGCCACCAA
......(((((.(..(((.((((..(((..(((....)))..))).....)))).)))..).)))))...((((.((..((((.((((........))))))))...))..))))..... ( -45.30)
>DroVir_CAF1 95063 120 - 1
CCAUUUCACCGUUAUGGUCGCCGAUCGCAAUACGCACGUGGGCUGCGCCGCAUCUACCUAUUCGGUUUCGGGUCAGUCCUACAAGGCCUUCCUCAUGGCCUGCAACUAUGCCGCCACCAA
..............((((.((.....(((....((..(((((((((.(((.....(((.....)))..)))).))).))))).(((((........))))))).....))).)).)))). ( -34.70)
>DroPse_CAF1 100805 120 - 1
UCACUUCACCGUCCUGGUGGCCGAUCGCAAUACGGAUGUGGGAUGCGCCGUGUCCACCUACGCGGUGGAGGGCCAGCCCUACAAGGCCUUCCUCAUGGCCUGCAACUAUGCGGCCACCAA
..............(((((((((...((........((((((.((.(((...((((((.....)))))).)))))..))))))(((((........))))))).......))))))))). ( -52.50)
>DroGri_CAF1 94020 120 - 1
CCAUUUCACCGUUAUGGUCGCUGAUCGCAACACCCGUGUGGGCUGUGCCGUAUCCACGUAUUCGGUAACUGGCCAGUCCUACAAGGCCUACCUUAUGGCCUGCAACUAUGCUGCCACCAA
..............((((.((.....(((......(((.((((((.((((...((........))....))))))))))))).(((((........))))).......))).)).)))). ( -36.80)
>DroWil_CAF1 102526 120 - 1
ACAUUUCACUGUAUUGGUCUCAGAUCGUAAUACGGAUAUCGGUUGUGCCGCUUCCACCUUUUCGGUGAGUGGAAAAUCCUAUAAGGGUUUCCUCAUGGCCUGCAAUUUUGCUGCCACCAA
.....((((((....(((........(.....)(((...(((.....)))..))))))....))))))(.(((((.(((.....)))))))).).((((..(((....))).)))).... ( -32.80)
>DroAna_CAF1 212431 120 - 1
UCACUUCACCGUCCUGGUGGCGGACCGGAACACGGAAGUAGGCUGUGCAGUCUCUACCUAUUCCGUGUCCGGCAAGCCCUACAAGGCCUUCCUCAUGGCCUGCAAUUACGCUGCUACCAA
..............(((((((((.(((((.(((((((.((((..(........)..))))))))))))))))...........(((((........))))).........))))))))). ( -47.30)
>consensus
ACAUUUCACCGUCCUGGUCGCCGAUCGCAAUACGGAUGUGGGCUGUGCCGCAUCCACCUAUUCGGUGUCCGGCCAGUCCUACAAGGCCUUCCUCAUGGCCUGCAACUAUGCUGCCACCAA
..............((((.((((..............((((((((.((((....((((.....))))..))))))).))))).(((((........))))).........)))).)))). (-26.18 = -27.60 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:22 2006