Locus 5655

Sequence ID X_DroMel_CAF1
Location 14,610,971 – 14,611,063
Length 92
Max. P 0.997890
window9188 window9189

overview

Window 8

Location 14,610,971 – 14,611,063
Length 92
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 75.25
Mean single sequence MFE -34.10
Consensus MFE -25.29
Energy contribution -25.30
Covariance contribution 0.01
Combinations/Pair 1.16
Mean z-score -2.18
Structure conservation index 0.74
SVM decision value 2.95
SVM RNA-class probability 0.997890
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14610971 92 + 22224390
---------AAGUGGUGGCCUCCACCAGUAGCUACAGUCGCCAGAUGACCUGGGCAAAUGCACCAGAGUUUGUUCCCAGGUACAAAGCCAAUUCUGCCGAU
---------.(.((((((...)))))).).......((((.((((((((((((((((((........)))))..))))))).))........)))).)))) ( -29.40)
>DroSec_CAF1 85734 101 + 1
AGAGAAGAGAAGUGGUGGCCACCACCAGCAGCUACAGUCGGCAGAUGACCUGGGCAAAUGCACCAGAGUUCGUGCCCAGGUACAAAGCUAAUCCUGCCGAG
.......((..(((((((...)))))).)..))....(((((((((.(((((((((...((......))...))))))))).........)).))))))). ( -38.00)
>DroYak_CAF1 80888 97 + 1
GGAGC----AGGAUGUGGCCAGCACCAGCAGCUACAAUUGGCAAAAGAUCUGGGCAAAUGCACCGGUAUUCGUGCCUAGAUGCAAGAGUAUUCCUGCCGAG
.(.((----((((((((((..((....)).))))))....(((.....(((((((((((((....)))))..)))))))))))........)))))))... ( -34.90)
>consensus
_GAG_____AAGUGGUGGCCACCACCAGCAGCUACAGUCGGCAGAUGACCUGGGCAAAUGCACCAGAGUUCGUGCCCAGGUACAAAGCUAAUCCUGCCGAG
..............(((((...........)))))..(((((((((.(((((((((...((......))...))))))))).........)).))))))). (-25.29 = -25.30 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 14,610,971 – 14,611,063
Length 92
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 75.25
Mean single sequence MFE -31.73
Consensus MFE -22.10
Energy contribution -23.00
Covariance contribution 0.90
Combinations/Pair 1.16
Mean z-score -1.27
Structure conservation index 0.70
SVM decision value 0.07
SVM RNA-class probability 0.570131
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14610971 92 - 22224390
AUCGGCAGAAUUGGCUUUGUACCUGGGAACAAACUCUGGUGCAUUUGCCCAGGUCAUCUGGCGACUGUAGCUACUGGUGGAGGCCACCACUU---------
.(((.((((.(((((..((((((.(((......))).))))))...).))))....)))).)))..........((((((...))))))...--------- ( -31.60)
>DroSec_CAF1 85734 101 - 1
CUCGGCAGGAUUAGCUUUGUACCUGGGCACGAACUCUGGUGCAUUUGCCCAGGUCAUCUGCCGACUGUAGCUGCUGGUGGUGGCCACCACUUCUCUUCUCU
.((((((((........((.(((((((((...((....)).....)))))))))))))))))))..........((((((...))))))............ ( -36.30)
>DroYak_CAF1 80888 97 - 1
CUCGGCAGGAAUACUCUUGCAUCUAGGCACGAAUACCGGUGCAUUUGCCCAGAUCUUUUGCCAAUUGUAGCUGCUGGUGCUGGCCACAUCCU----GCUCC
...(((((((...............((((.((...(.((.((....)))).)...)).))))...(((.(((((....)).))).)))))))----))).. ( -27.30)
>consensus
CUCGGCAGGAUUAGCUUUGUACCUGGGCACGAACUCUGGUGCAUUUGCCCAGGUCAUCUGCCGACUGUAGCUGCUGGUGGUGGCCACCACUU_____CUC_
.((((((((........((.(((((((((...((....)).....)))))))))))))))))))...........((((.....))))............. (-22.10 = -23.00 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:21 2006