| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,608,685 – 14,608,789 |
| Length | 104 |
| Max. P | 0.552179 |
| Location | 14,608,685 – 14,608,789 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 86.45 |
| Mean single sequence MFE | -28.48 |
| Consensus MFE | -19.46 |
| Energy contribution | -19.50 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14608685 104 - 22224390 CUGACUGACUGGCUCAACAGUUGUCGCGAUUGAUUUGGCAACUGGGUAUUGGUUAUAGGGUAUUGGGUAUUGAGUAUUGAGUAU-----AUUGACUAUUGGUUGUCGCA ..(((.(((((......))))))))((((.....))((((((..(....((((((....(((((.(((((...))))).)))))-----..)))))))..)))))))). ( -27.00) >DroSec_CAF1 83758 97 - 1 CUGACUGACUGGCUCAACAGUUGUCGCGAUUGAUUUGGCAACUGGGUAUUGGAUACAGGGU-------AUUGAGUAUGGAGUAU-----AUUGACUAUUGGUUGUCGCA ..(((.(((((......))))))))(((((.....((((((((..(((((.(((((...))-------))).)))))..)))..-----..)).)))......))))). ( -25.40) >DroSim_CAF1 83065 97 - 1 CUGACUGACUGGCUCAACAGUUGUCGCGAUUGAUUUGGCAACUGGGUAUUGGAUAUAGGGU-------AUUGAGUAUGGAGUAU-----AUUGACUAUUGGUUGUCGCA ..(((.(((((......))))))))(((((.....((((((((..(((((.(((((...))-------))).)))))..)))..-----..)).)))......))))). ( -24.10) >DroEre_CAF1 78260 96 - 1 CUGACUGACUGGCUCAACAGUUGUCGCGAUUGAUUUGGCAACUGGGUAUUGGGUAUUGGGU-------AUUGAGUACUGAGUAUUGAGUACUGA------GUUGUCGUA ..(((.(((((......))))))))...........(((((((.((((((.((((((.(((-------((...))))).)))))).)))))).)------))))))... ( -36.40) >DroYak_CAF1 80098 102 - 1 CUGACUGACUGGCUCAACAGUUGUCGCGAUUGAUUUGGCAACAUGGUAUUGGGUAUUGGGU-------ACUAAGUAUUGAGUAUUGAGUAUUGAGAAUUGGUUGUCGCA ..(((.(((((......))))))))(((((..(((((....)..((((((.((((((.(((-------((...))))).)))))).))))))..))))..))))).... ( -29.50) >consensus CUGACUGACUGGCUCAACAGUUGUCGCGAUUGAUUUGGCAACUGGGUAUUGGAUAUAGGGU_______AUUGAGUAUUGAGUAU_____AUUGACUAUUGGUUGUCGCA ..(((.(((((......))))))))(((((......(....)...(((((.(((((..((((.....))))..))))).)))))...................))))). (-19.46 = -19.50 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:19 2006