Locus 5651

Sequence ID	X_DroMel_CAF1
Location	14,601,086 – 14,601,179
Length	93
Max. P	0.637711

overview

Window 9

Location	14,601,086 – 14,601,179
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	79.89
Mean single sequence MFE	-19.75
Consensus MFE	-9.66
Energy contribution	-11.22
Covariance contribution	1.56
Combinations/Pair	1.12
Mean z-score	-2.04
Structure conservation index	0.49
SVM decision value	0.22
SVM RNA-class probability	0.637711
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14601086 93 + 22224390
AAUUGUGUUGCAAUUAGUGUACUACACCUCCCCACGAUGCCAAUUAAAUAUGUUUAGCUGUCCCAUUAGUUGAUAUUUAUUUAAUUGUUAGCC
.((((((.........(((.....))).....))))))((((((((((((...(((((((......)))))))....))))))))))...)). ( -17.34)
>DroSec_CAF1 75694 93 + 1
AAUUGUGUUGCAAUUAGUAUGCUACACCUCCCCUCGAUGCCAAUUAAAUGUGUUUAGCUGUCCCAUUAGUUGAUAUUUAUUUAAUUGUCAGUC
....((((.(((.......))).))))..........((.((((((((((...(((((((......)))))))....)))))))))).))... ( -20.10)
>DroSim_CAF1 76059 73 + 1
AAUUCUG--GCAAU------------------CUCGUUGCCAAUUAAAUGUGUUUAGCUGUCCCAUUAGUUGAUAUUUAUUUAAUUGUCACUC
......(--(((((------------------...))))))(((((((((...(((((((......)))))))....)))))))))....... ( -16.70)
>DroEre_CAF1 71501 90 + 1
AAUUGUGCUGCAAUUAGUAUGCUACACCUCCCCGCGACGCCAAUUAAAUGUGUGUAGG---CGCAUUGGUUGAUAUUUAUUUAAUUGUCAGCU
......(((((((((((.(((.((.(((....(((.((((((......)).))))..)---))....))))).)))....))))))).)))). ( -21.20)
>DroYak_CAF1 72332 90 + 1
AAUUGUGUUGCAAUUAGUAGGCUACACCUCCCCUCGAUGACAAUUAAAUGUGUGUAGCUACCCCAUUAGU---UAUUUAUUUAAUUGUCAGCU
....((((.((.........)).))))..........(((((((((((((...(((((((......))))---))).)))))))))))))... ( -23.40)
>consensus
AAUUGUGUUGCAAUUAGUAUGCUACACCUCCCCUCGAUGCCAAUUAAAUGUGUUUAGCUGUCCCAUUAGUUGAUAUUUAUUUAAUUGUCAGCC
(((((.....)))))......................((.((((((((((...(((((((......)))))))....)))))))))).))... ( -9.66 = -11.22 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:13 2006