Locus 5649

Sequence ID X_DroMel_CAF1
Location 14,597,406 – 14,597,509
Length 103
Max. P 0.991230
window9176

overview

Window 6

Location 14,597,406 – 14,597,509
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.92
Mean single sequence MFE -27.96
Consensus MFE -14.88
Energy contribution -16.48
Covariance contribution 1.60
Combinations/Pair 1.20
Mean z-score -2.35
Structure conservation index 0.53
SVM decision value 2.26
SVM RNA-class probability 0.991230
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14597406 103 - 22224390
----------------AUUUGGCUUUAUUCCCCGUGAUUAACAACGUGGGAAGAGUGGAAAAUCAUAUACC-CAUAGAUAGGUGAAAAUAUCACCUAUGUCACCAUGACAUUUCGAUAAC
----------------.(((.((((..((((((((........))).))))))))).))).(((.......-.....((((((((.....))))))))(((.....))).....)))... ( -28.80)
>DroSec_CAF1 72335 110 - 1
UUGUAAUUCCUCUGUCAUUUGGCUUCGUUCCCCGUGAUUAGCAACGUGGGAAGAGUGGA-AAUCAUAUACC-CAUAGAUUGGUGAAAAUAUCACCAAUGUCACCAUGACAUG--------
............((((((.((((.((.((((((((........))).)))))))((((.-..........)-)))..((((((((.....))))))))))))..))))))..-------- ( -31.30)
>DroSim_CAF1 72568 118 - 1
UUGUAAUUCCUCUGUCAUUUGGCUUCAUUCCCCGUGAUUAGCAACGUGGGAAGAGUGGA-AAUCAUAUACC-CAUAGAUUGGUGAAAAUUUCACCAAUGUCACCAUGACAUUUCGAUUAC
..((((((....((((((.((((.((.((((((((........))).)))))))((((.-..........)-)))..((((((((.....))))))))))))..))))))....)))))) ( -34.20)
>DroEre_CAF1 68624 111 - 1
CUGUAAUUCCUCUGUCAUUUGGCUUUAUUCACCGUGAUUUACAACGUGGGAAGAGCUAA-GAUUAAAUACC-CCUAAA---GU---AAUAUACCCUUUGUCAGCAUAACAUUUCUAUUA-
...........(((.(((((((((((.(((((.((........))))))).))))))))-)......(((.-......---))---)..........)).)))................- ( -16.20)
>DroYak_CAF1 69111 112 - 1
UUGUAAUUCCUCUGUCAUUUUGCUUUUUUCAUCGUGAUUUUCAACGUGGGAAGAGUGGA-AAUUACAAUCCACAUAGAUAGGUGAAAAUAUCACC--UGUUUUUACUGCAUAUGU-----
((((((((..........((..(((((..((.(((........)))))..)))))..))-))))))))...((((((((((((((.....)))))--)))).........)))))----- ( -29.30)
>consensus
UUGUAAUUCCUCUGUCAUUUGGCUUUAUUCCCCGUGAUUAACAACGUGGGAAGAGUGGA_AAUCAUAUACC_CAUAGAUAGGUGAAAAUAUCACCAAUGUCACCAUGACAUUUCGAU_A_
..................((.((((..((((((((........))).))))))))).))..................((((((((.....))))))))(((.....)))........... (-14.88 = -16.48 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:53:10 2006